RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 FAM105AQ9NUU6 356 aa18.76■□□□□ 0.59
CLK3-210ENST00000563112 HCSTQ9UBK5 93 aa18.76■□□□□ 0.59
CLK3-210ENST00000563112 ATG2AQ2TAZ0 1938 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 GRXCR2A6NFK2 248 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 ZNF623O75123 536 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 ATF7P17544 494 aaPredicted RBP18.75■□□□□ 0.59
CLK3-210ENST00000563112 TECP42680 631 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 PLCB3Q01970 1234 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 PCBP1Q15365 356 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLK3-210ENST00000563112 CTC1Q2NKJ3 1217 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 LRRC55Q6ZSA7 311 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 PIGOQ8TEQ8 1089 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 MRPS27Q92552 414 aaKnown RBP18.75■□□□□ 0.59
CLK3-210ENST00000563112 NACC1Q96RE7 527 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 TLE6Q9H808 572 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 AGPAT5Q9NUQ2 364 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 LZTS1Q9Y250 596 aa18.75■□□□□ 0.59
CLK3-210ENST00000563112 ARID2Q68CP9 1835 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 PLXNA4Q9HCM2 1894 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 CARNS1A5YM72 827 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 ERLIN2O94905 339 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 IL9P15248 144 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 NRIP1P48552 1158 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 RARRES1P49788 294 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 ADAM15Q13444 863 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 GLB1LQ6UWU2 654 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 EFHBQ8N7U6 833 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 POLR3CQ9BUI4 534 aaPredicted RBP18.74■□□□□ 0.59
CLK3-210ENST00000563112 MINDY3Q9H8M7 445 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 XPNPEP1Q9NQW7 623 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 SPG21Q9NZD8 308 aa18.74■□□□□ 0.59
CLK3-210ENST00000563112 FSD2A1L4K1 749 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 SPATA31C1P0DKV0 1188 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 U2AF2P26368 475 aaKnown RBP eCLIP18.73■□□□□ 0.593e-6■■□□□ 13
CLK3-210ENST00000563112 GTF2F1P35269 517 aaKnown RBP eCLIP18.73■□□□□ 0.59
CLK3-210ENST00000563112 LTBRP36941 435 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 ALDH7A1P49419 539 aaKnown RBP18.73■□□□□ 0.59
CLK3-210ENST00000563112 MCM2P49736 904 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 NDUFV1P49821 464 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 POU5F1BQ06416 359 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 ADGRD2Q7Z7M1 963 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 RBM23Q86U06 439 aaKnown RBP18.73■□□□□ 0.59
CLK3-210ENST00000563112 CATSPER3Q86XQ3 398 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 FAM178BQ8IXR5 827 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 LPPQ93052 612 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 PCDHB2Q9Y5E7 798 aa18.73■□□□□ 0.59
CLK3-210ENST00000563112 INO80B-WBP1J3KQ70 363 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 AXLP30530 894 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 ARL2P36404 184 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 PTENP60484 403 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 RNASELQ05823 741 aaKnown RBP18.72■□□□□ 0.59
CLK3-210ENST00000563112 LONRF3Q496Y0 759 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 HAUS3Q68CZ6 603 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 CNNM3Q8NE01 707 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 TMX3Q96JJ7 454 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 RAB34Q9BZG1 259 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 NGRNQ9NPE2 291 aaKnown RBP18.72■□□□□ 0.59
CLK3-210ENST00000563112 ENTPD7Q9NQZ7 604 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 CD207Q9UJ71 328 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 DBR1Q9UK59 544 aaKnown RBP18.72■□□□□ 0.59
CLK3-210ENST00000563112 INPP5FQ9Y2H2 1132 aa18.72■□□□□ 0.59
CLK3-210ENST00000563112 A0A087WWV3 80 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 LINC01565O15544 149 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 USO1O60763 962 aaKnown RBP18.71■□□□□ 0.59
CLK3-210ENST00000563112 MED24O75448 989 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 MUTP22033 750 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 RPA1P27694 616 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 HOXA11P31270 313 aaPredicted RBP18.71■□□□□ 0.59
CLK3-210ENST00000563112 SSTR3P32745 418 aaPredicted RBP18.71■□□□□ 0.59
CLK3-210ENST00000563112 PBX3P40426 434 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 ERVFC1P60507 584 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 BMS1Q14692 1282 aaKnown RBP18.71■□□□□ 0.59
CLK3-210ENST00000563112 CLUL1Q15846 466 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 NOMO2Q5JPE7 1267 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 MCTP1Q6DN14 999 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 MRPL10Q7Z7H8 261 aaKnown RBP18.71■□□□□ 0.59
CLK3-210ENST00000563112 IFNLR1Q8IU57 520 aaPredicted RBP18.71■□□□□ 0.59
CLK3-210ENST00000563112 SLC39A11Q8N1S5 342 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 MCPH1Q8NEM0 835 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 URGCPQ8TCY9 931 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 CCDC51Q96ER9 411 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 CDCA3Q99618 268 aaPredicted RBP18.71■□□□□ 0.59
CLK3-210ENST00000563112 POLR3FQ9H1D9 316 aaPredicted RBP18.71■□□□□ 0.59
CLK3-210ENST00000563112 STK24Q9Y6E0 443 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 CNTNAP2Q9UHC6 1331 aa18.71■□□□□ 0.59
CLK3-210ENST00000563112 FSCN2O14926 492 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 ZC3H11AO75152 810 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLK3-210ENST00000563112 OFD1O75665 1012 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 SRGAP2BP0DMP2 458 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 GLRA2P23416 452 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 FXR2P51116 673 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLK3-210ENST00000563112 BCAR1P56945 870 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 DLX2Q07687 328 aaPredicted RBP18.7■□□□□ 0.58
CLK3-210ENST00000563112 CAPSQ13938 189 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 PLPP4Q5VZY2 271 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 NOTUMQ6P988 496 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 TMC7Q7Z402 723 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 GJD3Q8N144 294 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 ASAP3Q8TDY4 903 aa18.7■□□□□ 0.58
CLK3-210ENST00000563112 TMEM169Q96HH4 297 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms