RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 PRPF31Q8WWY3 499 aaKnown RBP15.3■□□□□ 0.04
CLK3-209ENST00000562670 CNOT6LQ96LI5 555 aaKnown RBP15.3■□□□□ 0.04
CLK3-209ENST00000562670 DMAC2Q9NW81 257 aa15.3■□□□□ 0.04
CLK3-209ENST00000562670 SUCLA2Q9P2R7 463 aaPredicted RBP15.3■□□□□ 0.04
CLK3-209ENST00000562670 PTCH2Q9Y6C5 1203 aa15.3■□□□□ 0.04
CLK3-209ENST00000562670 MYADML2A6NDP7 307 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 CABYRO75952 493 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 NR3C1P04150 777 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 RPLP2P05387 115 aaKnown RBP15.29■□□□□ 0.04
CLK3-209ENST00000562670 GNAT1P11488 350 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 UBASH3AP57075 661 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 PLCB2Q00722 1185 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 BEX3Q00994 111 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 DRP2Q13474 957 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 HSP90AA2PQ14568 343 aaPredicted RBP15.29■□□□□ 0.04
CLK3-209ENST00000562670 KRT31Q15323 416 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 TRAPPC12Q8WVT3 735 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 XPO4Q9C0E2 1151 aaKnown RBP15.29■□□□□ 0.04
CLK3-209ENST00000562670 CCDC113Q9H0I3 377 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 HMX1Q9NP08 348 aaPredicted RBP15.29■□□□□ 0.04
CLK3-209ENST00000562670 IFNKQ9P0W0 207 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 PTPN22Q9Y2R2 807 aa15.29■□□□□ 0.04
CLK3-209ENST00000562670 SMIM35A0A1B0GVV1 85 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 LRRIQ4A6NIV6 560 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 KIAA0391O15091 583 aaKnown RBP15.28■□□□□ 0.04
CLK3-209ENST00000562670 MAPK13O15264 365 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 PGK1P00558 417 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 CLCN3P51790 818 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 PPP2R3AQ06190 1150 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 FILIP1LQ4L180 1135 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 NFRKBQ6P4R8 1299 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 TAS1R3Q7RTX0 852 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 FRMD5Q7Z6J6 570 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 RNF180Q86T96 592 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 ZNF410Q86VK4 478 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 ZBTB8OSQ8IWT0 167 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 SYCP3Q8IZU3 236 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 LRRC71Q8N4P6 559 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 MAP7D2Q96T17 732 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 TSEN34Q9BSV6 310 aaKnown RBP15.28■□□□□ 0.04
CLK3-209ENST00000562670 KIFC3Q9BVG8 833 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 SUGCTQ9HAC7 445 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 METTL14Q9HCE5 456 aaKnown RBP15.28■□□□□ 0.04
CLK3-209ENST00000562670 INTS13Q9NVM9 706 aa15.28■□□□□ 0.04
CLK3-209ENST00000562670 MOXD2PA6NHM9 499 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 LGALS16A8MUM7 142 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 TPM2P07951 284 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 GARTP22102 1010 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 COPB1P53618 953 aaKnown RBP15.27■□□□□ 0.04
CLK3-209ENST00000562670 MCCD1P59942 119 aaPredicted RBP15.27■□□□□ 0.04
CLK3-209ENST00000562670 PTENP60484 403 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 IGBP1P78318 339 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 IRX5P78411 483 aaPredicted RBP15.27■□□□□ 0.04
CLK3-209ENST00000562670 ENPEPQ07075 957 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 STRN3Q13033 797 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 ADAM9Q13443 819 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 NR1I3Q14994 352 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 FAM187BQ17R55 369 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 LHX8Q68G74 356 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 ZPBP2Q6X784 338 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 METTL13Q8N6R0 699 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 RTN4Q9NQC3 1192 aaKnown RBP15.27■□□□□ 0.04
CLK3-209ENST00000562670 TSKSQ9UJT2 592 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 STYXL1Q9Y6J8 313 aa15.27■□□□□ 0.04
CLK3-209ENST00000562670 PCNTO95613 3336 aa15.27■□□□□ 0.03
CLK3-209ENST00000562670 C17orf102A2RUQ5 167 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 K7ERI5 159 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 EPB41P11171 864 aaKnown RBP15.26■□□□□ 0.03
CLK3-209ENST00000562670 PHKA2P46019 1235 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 PTPN11Q06124 597 aaPredicted RBP15.26■□□□□ 0.03
CLK3-209ENST00000562670 PCBP1Q15365 356 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLK3-209ENST00000562670 MAN2A1Q16706 1144 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 HSP90AA4PQ58FG1 418 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 TAF2Q6P1X5 1199 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 RHPN2Q8IUC4 686 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 TRIM59Q8IWR1 403 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 KIAA0319LQ8IZA0 1049 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 C7orf31Q8N865 590 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 RNF149Q8NC42 400 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 PRIMPOLQ96LW4 560 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 NAP1L5Q96NT1 182 aaPredicted RBP15.26■□□□□ 0.03
CLK3-209ENST00000562670 TUBGCP2Q9BSJ2 902 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLK3-209ENST00000562670 PAK6Q9NQU5 681 aaPredicted RBP15.26■□□□□ 0.03
CLK3-209ENST00000562670 SETD4Q9NVD3 440 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 GTF2IRD1Q9UHL9 959 aa15.26■□□□□ 0.03
CLK3-209ENST00000562670 ITIH6Q6UXX5 1313 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 A0A1W2PQC6 194 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 HNRNPDLO14979 420 aaKnown RBP15.25■□□□□ 0.03
CLK3-209ENST00000562670 ASGR1P07306 291 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 PBX1P40424 430 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 MTIF2P46199 727 aaKnown RBP15.25■□□□□ 0.03
CLK3-209ENST00000562670 KCNA10Q16322 511 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 MAPK6Q16659 721 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 SLC39A4Q6P5W5 647 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 RPAINQ86UA6 219 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 KSR1Q8IVT5 923 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 FBXL18Q96ME1 805 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 SEZ6LQ9BYH1 1024 aa15.25■□□□□ 0.03
CLK3-209ENST00000562670 FZD8Q9H461 694 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms