RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 XPAP23025 273 aaPredicted RBP4.58□□□□□ -1.68
VPS35-203ENST00000562420 WNT3AP56704 352 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 ERVK-21P61565 698 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 AMPD3Q01432 767 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 ADAM15Q13444 863 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 TCIRG1Q13488 830 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 SPIDRQ14159 915 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 ANO4Q32M45 955 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 PITRM1Q5JRX3 1037 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 POLNQ7Z5Q5 900 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 AHCYL2Q96HN2 611 aaKnown RBP4.58□□□□□ -1.68
VPS35-203ENST00000562420 FAM126AQ9BYI3 521 aaPredicted RBP4.58□□□□□ -1.68
VPS35-203ENST00000562420 CD248Q9HCU0 757 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 DNAI1Q9UI46 699 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 FAM184BQ9ULE4 1060 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 CDY2AQ9Y6F7 541 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 A0A1W2PR48 441 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 LCHNA4D1U4 455 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 TRIM75PA6NK02 468 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 PRKD3O94806 890 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 MAGEA10P43363 369 aaPredicted RBP4.57□□□□□ -1.68
VPS35-203ENST00000562420 KIR2DL3P43628 341 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 SELENOPP49908 381 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 KRT85P78386 507 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 PPARAQ07869 468 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 RIN1Q13671 783 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 UGT8Q16880 541 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.57□□□□□ -1.68
VPS35-203ENST00000562420 TCTN3Q6NUS6 607 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 LHFPL2Q6ZUX7 228 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 ADGRE4PQ86SQ3 457 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 SHCBP1Q8NEM2 672 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 OR14K1Q8NGZ2 314 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 EDAQ92838 391 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 LRRC37BQ96QE4 947 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 MPHOSPH9Q99550 1183 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 DPYSL5Q9BPU6 564 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 FDXACB1Q9BRP7 624 aaPredicted RBP4.57□□□□□ -1.68
VPS35-203ENST00000562420 PLA2G12BQ9BX93 195 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 KRTAP3-1Q9BYR8 98 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 KCTD10Q9H3F6 313 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 PCDH12Q9NPG4 1184 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 SMPD4Q9NXE4 827 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 COL4A3BPQ9Y5P4 624 aa4.57□□□□□ -1.68
VPS35-203ENST00000562420 WASHC2AQ641Q2 1341 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 C1QTNF3-AMACRE9PGA6 284 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 CDC14BO60729 498 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 ZNF623O75123 536 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 TOX4O94842 621 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 LY86O95711 162 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 BPIFB4P59827 614 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 TRIM25Q14258 630 aaKnown RBP4.56□□□□□ -1.68
VPS35-203ENST00000562420 C19orf54Q5BKX5 351 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 CCDC62Q6P9F0 684 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 LMBR1LQ6UX01 489 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 TAS1R1Q7RTX1 841 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 KCNK18Q7Z418 384 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 LIMS2Q7Z4I7 341 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 TAX1BP1Q86VP1 789 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 GPR135Q8IZ08 494 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 GIMAP8Q8ND71 665 aaPredicted RBP4.56□□□□□ -1.68
VPS35-203ENST00000562420 PKNOX2Q96KN3 472 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 UIMC1Q96RL1 719 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 CDK5RAP1Q96SZ6 601 aaKnown RBP4.56□□□□□ -1.68
VPS35-203ENST00000562420 PTPN18Q99952 460 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 ANO3Q9BYT9 981 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 SLC5A4Q9NY91 659 aa4.56□□□□□ -1.68
VPS35-203ENST00000562420 EVLQ9UI08 416 aaPredicted RBP4.56□□□□□ -1.68
VPS35-203ENST00000562420 ZFR2Q9UPR6 939 aaKnown RBP4.56□□□□□ -1.68
VPS35-203ENST00000562420 FOXS1O43638 330 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 LTA4HP09960 611 aaKnown RBP4.55□□□□□ -1.68
VPS35-203ENST00000562420 HNRNPLP14866 589 aaKnown RBP eCLIP4.55□□□□□ -1.68
VPS35-203ENST00000562420 ADAM17P78536 824 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 KLF1Q13351 362 aaPredicted RBP4.55□□□□□ -1.68
VPS35-203ENST00000562420 ICAM4Q14773 271 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 PTPROQ16827 1216 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 INAVAQ3KP66 663 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 HS1BP3Q53T59 392 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 GAREM2Q75VX8 874 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 FUKQ8N0W3 1084 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 FAM177A1Q8N128 213 aaPredicted RBP4.55□□□□□ -1.68
VPS35-203ENST00000562420 PIK3C3Q8NEB9 887 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 Q8TCH9 128 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 AUTS2Q8WXX7 1259 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 DVL3Q92997 716 aaPredicted RBP4.55□□□□□ -1.68
VPS35-203ENST00000562420 LOXL4Q96JB6 756 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 GPHA2Q96T91 129 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 C14orf119Q9NWQ9 140 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 MAGEL2Q9UJ55 1249 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 USP18Q9UMW8 372 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 TCAF1Q9Y4C2 921 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 TESMINQ9Y4I5 508 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 RBM8AQ9Y5S9 174 aaKnown RBP4.55□□□□□ -1.68
VPS35-203ENST00000562420 SHROOM4Q9ULL8 1493 aa4.55□□□□□ -1.68
VPS35-203ENST00000562420 A0A1W2PRX2 142 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 ANKRD62A6NC57 917 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 GOLGA8AA7E2F4 631 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 GOLGA8BA8MQT2 603 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 ADRB1P08588 477 aa4.54□□□□□ -1.68
VPS35-203ENST00000562420 CLEC2LP0C7M8 214 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms