RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 NFX1Q12986 1120 aaKnown RBP24.06■■□□□ 1.44
SNX1-210ENST00000560260 PPP2R5AQ15172 486 aa24.06■■□□□ 1.44
SNX1-210ENST00000560260 AMHR2Q16671 573 aa24.06■■□□□ 1.44
SNX1-210ENST00000560260 CNNM4Q6P4Q7 775 aa24.06■■□□□ 1.44
SNX1-210ENST00000560260 PSRC1Q6PGN9 363 aaPredicted RBP24.06■■□□□ 1.44
SNX1-210ENST00000560260 C7orf25Q9BPX7 421 aa24.06■■□□□ 1.44
SNX1-210ENST00000560260 UBE2OQ9C0C9 1292 aaKnown RBP24.06■■□□□ 1.44
SNX1-210ENST00000560260 CCDC113Q9H0I3 377 aa24.06■■□□□ 1.44
SNX1-210ENST00000560260 C17orf75Q9HAS0 396 aa24.06■■□□□ 1.44
SNX1-210ENST00000560260 PARVGQ9HBI0 331 aa24.06■■□□□ 1.44
SNX1-210ENST00000560260 PTPRSQ13332 1948 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 SLC16A4O15374 487 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 DMP1Q13316 513 aaPredicted RBP24.05■■□□□ 1.44
SNX1-210ENST00000560260 SHHQ15465 462 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 OTOP2Q7RTS6 562 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 TAS1R3Q7RTX0 852 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 SFR1Q86XK3 245 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 CNNM3Q8NE01 707 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 DEPTORQ8TB45 409 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 SPIRE2Q8WWL2 714 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 ZHX3Q9H4I2 956 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 CXXC1Q9P0U4 656 aaPredicted RBP24.05■■□□□ 1.44
SNX1-210ENST00000560260 ARHGAP28Q9P2N2 729 aa24.05■■□□□ 1.44
SNX1-210ENST00000560260 CCDC169A6NNP5 214 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 INO80B-WBP1J3KQ70 363 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 FGBP02675 491 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 BMP8BP34820 402 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 NCKAP1LP55160 1127 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 ASIC1P78348 528 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 ODR4Q5SWX8 454 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 PRPF38BQ5VTL8 546 aaKnown RBP24.04■■□□□ 1.44
SNX1-210ENST00000560260 MYCT1Q8N699 235 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 APBB2Q92870 758 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 FGFBP2Q9BYJ0 223 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 INO80BQ9C086 356 aaPredicted RBP24.04■■□□□ 1.44
SNX1-210ENST00000560260 KMT5AQ9NQR1 393 aa24.04■■□□□ 1.44
SNX1-210ENST00000560260 TTLL13PA6NNM8 815 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 GPR182O15218 404 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 B4GALT5O43286 388 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 TSPAN1O60635 241 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 IDEP14735 1019 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 SFPQP23246 707 aaKnown RBP eCLIP24.03■■□□□ 1.44
SNX1-210ENST00000560260 AMPD3Q01432 767 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 COASYQ13057 564 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 DSC3Q14574 896 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 RASIP1Q5U651 963 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 CATSPER4Q7RTX7 472 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 RTN4RL1Q86UN2 441 aaPredicted RBP24.03■■□□□ 1.44
SNX1-210ENST00000560260 ZBTB8OSQ8IWT0 167 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 TMEM161BQ8NDZ6 487 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 HERVK_113Q902F9 699 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 NTPCRQ9BSD7 190 aaKnown RBP24.03■■□□□ 1.44
SNX1-210ENST00000560260 LRRC27Q9C0I9 530 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 C2orf40Q9H1Z8 148 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 FZD8Q9H461 694 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 LARSQ9P2J5 1176 aaKnown RBP24.03■■□□□ 1.44
SNX1-210ENST00000560260 USP20Q9Y2K6 914 aa24.03■■□□□ 1.44
SNX1-210ENST00000560260 PHLPP2Q6ZVD8 1323 aa24.02■■□□□ 1.44
SNX1-210ENST00000560260 LOC101059915A0A1B0GWI6 518 aaPredicted RBP24.02■■□□□ 1.44
SNX1-210ENST00000560260 GTPBP6O43824 516 aaPredicted RBP24.02■■□□□ 1.44
SNX1-210ENST00000560260 KLRC4O43908 158 aa24.02■■□□□ 1.44
SNX1-210ENST00000560260 LIN28BQ6ZN17 250 aaKnown RBP eCLIP24.02■■□□□ 1.44
SNX1-210ENST00000560260 HPS3Q969F9 1004 aa24.02■■□□□ 1.44
SNX1-210ENST00000560260 AGPAT5Q9NUQ2 364 aa24.02■■□□□ 1.44
SNX1-210ENST00000560260 PANK4Q9NVE7 773 aa24.02■■□□□ 1.44
SNX1-210ENST00000560260 TRAK2O60296 914 aa24.01■■□□□ 1.43
SNX1-210ENST00000560260 PRKCBP05771 671 aa24.01■■□□□ 1.43
SNX1-210ENST00000560260 GAP43P17677 238 aa24.01■■□□□ 1.43
SNX1-210ENST00000560260 NMT1P30419 496 aaKnown RBP24.01■■□□□ 1.43
SNX1-210ENST00000560260 WDR5P61964 334 aaKnown RBP24.01■■□□□ 1.43
SNX1-210ENST00000560260 EHHADHQ08426 723 aa24.01■■□□□ 1.43
SNX1-210ENST00000560260 PPP4R3CPQ6ZMV5 832 aa24.01■■□□□ 1.43
SNX1-210ENST00000560260 DACT1Q9NYF0 836 aa24.01■■□□□ 1.43
SNX1-210ENST00000560260 K7ENM7 598 aa24■■□□□ 1.43
SNX1-210ENST00000560260 BAIAP3O94812 1187 aa24■■□□□ 1.43
SNX1-210ENST00000560260 MAPTP10636 758 aaKnown RBP24■■□□□ 1.43
SNX1-210ENST00000560260 ACTN1P12814 892 aa24■■□□□ 1.43
SNX1-210ENST00000560260 HOXA11P31270 313 aaPredicted RBP24■■□□□ 1.43
SNX1-210ENST00000560260 DEFB103AP81534 67 aa24■■□□□ 1.43
SNX1-210ENST00000560260 IKBKEQ14164 716 aa24■■□□□ 1.43
SNX1-210ENST00000560260 FAM187BQ17R55 369 aa24■■□□□ 1.43
SNX1-210ENST00000560260 UNC13DQ70J99 1090 aa24■■□□□ 1.43
SNX1-210ENST00000560260 CPB2Q96IY4 423 aa24■■□□□ 1.43
SNX1-210ENST00000560260 TIGD1Q96MW7 591 aa24■■□□□ 1.43
SNX1-210ENST00000560260 TBC1D7Q9P0N9 293 aa24■■□□□ 1.43
SNX1-210ENST00000560260 PIN4Q9Y237 131 aaKnown RBP24■■□□□ 1.43
SNX1-210ENST00000560260 LAMA2P24043 3122 aaKnown RBP23.99■■□□□ 1.43
SNX1-210ENST00000560260 ABHD14A-ACY1A0A1B0GW23 586 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 DENND3A2RUS2 1198 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 ZBBXA8MT70 800 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 ARF4P18085 180 aaPredicted RBP23.99■■□□□ 1.43
SNX1-210ENST00000560260 CASP5P51878 434 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 EFNA5P52803 228 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 DPYDQ12882 1025 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 HERC4Q5GLZ8 1057 aaPredicted RBP23.99■■□□□ 1.43
SNX1-210ENST00000560260 HAUS6Q7Z4H7 955 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 FAM178BQ8IXR5 827 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 CCDC65Q8IXS2 484 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 GLIS3Q8NEA6 775 aa23.99■■□□□ 1.43
SNX1-210ENST00000560260 KCNN1Q92952 543 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms