RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TRIM9Q9C026 710 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 IFT122Q9HBG6 1241 aa11.12□□□□□ -0.63
USP3-216ENST00000559873 PRMT7Q9NVM4 692 aaPredicted RBP11.12□□□□□ -0.63
USP3-216ENST00000559873 NOC2LQ9Y3T9 749 aaKnown RBP11.12□□□□□ -0.63
USP3-216ENST00000559873 NPHP3-ACAD11A0A0J9YXS1 232 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 ABHD14A-ACY1A0A1B0GW23 586 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 TRAK2O60296 914 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 MBD3O95983 291 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 FGBP02675 491 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 MAPTP10636 758 aaKnown RBP11.11□□□□□ -0.63
USP3-216ENST00000559873 AFMP43652 599 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 NPTX2P47972 431 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 STRN3Q13033 797 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 ALCAMQ13740 583 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 LONRF3Q496Y0 759 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 PPP4R3CPQ6ZMV5 832 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 APBB1IPQ7Z5R6 666 aaPredicted RBP11.11□□□□□ -0.63
USP3-216ENST00000559873 FAM228AQ86W67 206 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 FMR1NBQ8N0W7 255 aaPredicted RBP11.11□□□□□ -0.63
USP3-216ENST00000559873 DBF4BQ8NFT6 615 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 BSNDQ8WZ55 320 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 CCDC51Q96ER9 411 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 PAGE5Q96GU1 130 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 ZNF668Q96K58 619 aaPredicted RBP11.11□□□□□ -0.63
USP3-216ENST00000559873 GDF15Q99988 308 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 C7orf25Q9BPX7 421 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 CHST12Q9NRB3 414 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 OLFML3Q9NRN5 406 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 PANK4Q9NVE7 773 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 DACT1Q9NYF0 836 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 PADI3Q9ULW8 664 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 ST3GAL5Q9UNP4 418 aa11.11□□□□□ -0.63
USP3-216ENST00000559873 PVALEFA0A1B0GWK0 134 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 FRMD3A2A2Y4 597 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 DENND3A2RUS2 1198 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 ZBBXA8MT70 800 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 GADD45BO75293 160 aaPredicted RBP11.1□□□□□ -0.63
USP3-216ENST00000559873 SMC2O95347 1197 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 AMHP03971 560 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 PRKCBP05771 671 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 ACRP10323 421 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 AXLP30530 894 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 BMP8BP34820 402 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 RAB27AP51159 221 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 NCKAP1LP55160 1127 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 MBTD1Q05BQ5 628 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 POSTNQ15063 836 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 HERC4Q5GLZ8 1057 aaPredicted RBP11.1□□□□□ -0.63
USP3-216ENST00000559873 UNC13DQ70J99 1090 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 ZNF365Q70YC5 407 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 SFR1Q86XK3 245 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 ELOA2Q8IYF1 753 aaPredicted RBP11.1□□□□□ -0.63
USP3-216ENST00000559873 ENGASEQ8NFI3 743 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 STAMQ92783 540 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 HVCN1Q96D96 273 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 DNAJC19Q96DA6 116 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 RNPC3Q96LT9 517 aaKnown RBP11.1□□□□□ -0.63
USP3-216ENST00000559873 TMEM134Q9H6X4 195 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 AGO3Q9H9G7 860 aaKnown RBP11.1□□□□□ -0.63
USP3-216ENST00000559873 MRPL44Q9H9J2 332 aaKnown RBP11.1□□□□□ -0.63
USP3-216ENST00000559873 ERVK-5Q9HDB9 667 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 C1orf112Q9NSG2 853 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 EXOC1Q9NV70 894 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 ARHGAP28Q9P2N2 729 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 PIN4Q9Y237 131 aaKnown RBP11.1□□□□□ -0.63
USP3-216ENST00000559873 DNAH12Q6ZR08 3092 aa11.1□□□□□ -0.63
USP3-216ENST00000559873 CNTNAP2Q9UHC6 1331 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 SIP14410 1827 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.09□□□□□ -0.63
USP3-216ENST00000559873 A0A1W2PPC1 479 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 SFI1A8K8P3 1242 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 K7ERI5 159 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 ACKR2O00590 384 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 SLC16A4O15374 487 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 NR1I2O75469 434 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 SKIP12755 728 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 LIG1P18858 919 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 COASYQ13057 564 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 PRPF4BQ13523 1007 aaKnown RBP11.09□□□□□ -0.63
USP3-216ENST00000559873 SNW1Q13573 536 aaKnown RBP11.09□□□□□ -0.63
USP3-216ENST00000559873 CUL4BQ13620 913 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 FAM187BQ17R55 369 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 FAM26FQ5R3K3 315 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 TWF2Q6IBS0 349 aaKnown RBP11.09□□□□□ -0.63
USP3-216ENST00000559873 NOTUMQ6P988 496 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 CHRDL2Q6WN34 429 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 OTOP2Q7RTS6 562 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 HACE1Q8IYU2 909 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 HERVK_113Q902F9 699 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 KCNN1Q92952 543 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 BICD1Q96G01 975 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 SLC9A7Q96T83 725 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.09□□□□□ -0.633e-6■□□□□ 10.1
USP3-216ENST00000559873 ADPGKQ9BRR6 497 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 NTPCRQ9BSD7 190 aaKnown RBP11.09□□□□□ -0.63
USP3-216ENST00000559873 KIFC3Q9BVG8 833 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 MRPL4Q9BYD3 311 aaKnown RBP11.09□□□□□ -0.63
USP3-216ENST00000559873 GTPBP4Q9BZE4 634 aaKnown RBP11.09□□□□□ -0.63
USP3-216ENST00000559873 BLZF1Q9H2G9 400 aa11.09□□□□□ -0.63
USP3-216ENST00000559873 CDHR5Q9HBB8 845 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms