RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 ERVK-11Q9UQG0 969 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 USP15Q9Y4E8 981 aaPredicted RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 ERCC6L2Q5T890 1561 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 ANKARQ7Z5J8 1434 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 ZMYM6O95789 1325 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 GOLGA8BA8MQT2 603 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 NMT2O60551 498 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 CTNND1O60716 968 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 ZC3H11AO75152 810 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP3-211ENST00000559257 RNASEH2AO75792 299 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 SUN1O94901 812 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 GJB6O95452 261 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 FYNP06241 537 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 ZNF18P17022 549 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 CFL1P23528 166 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 IFNA8P32881 189 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 ADCY8P40145 1251 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 KCNC4Q03721 635 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 LLGL2Q6P1M3 1020 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 C1orf228Q6PIY5 440 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 OLFM4Q6UX06 510 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 C4orf22Q6V702 233 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 MMAAQ8IVH4 418 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 NELFCDQ8IXH7 590 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 SLC38A6Q8IZM9 456 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 MRPL50Q8N5N7 158 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 BBOF1Q8ND07 529 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 DNAJC1Q96KC8 554 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 HERC2P3Q9BVR0 1158 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 EHD1Q9H4M9 534 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 CCSER2Q9H7U1 834 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 DNAJC18Q9H819 358 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 EHMT1Q9H9B1 1298 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 SLC38A10Q9HBR0 1119 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 C12orf4Q9NQ89 552 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 GPHNQ9NQX3 736 aaPredicted RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 THEGQ9P2T0 379 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 STK17AQ9UEE5 414 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 MTRF1LQ9UGC7 380 aaKnown RBP9.05□□□□□ -0.96
USP3-211ENST00000559257 MOSPD1Q9UJG1 213 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 SLC45A1Q9Y2W3 748 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 IFT52Q9Y366 437 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 PCDHB6Q9Y5E3 794 aa9.05□□□□□ -0.96
USP3-211ENST00000559257 NSD3Q9BZ95 1437 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 PVALEFA0A1B0GWK0 134 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 GOLGA8IPA6NC78 632 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 SNTNA6NMZ2 147 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 FADS2P1A8MWK0 482 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 H0YGN5 161 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 NDC80O14777 642 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 VILLO15195 856 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 KRT75O95678 551 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 CHEK2O96017 543 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 S100BP04271 92 aaPredicted RBP9.04□□□□□ -0.96
USP3-211ENST00000559257 UBTFL6P0CB48 400 aaPredicted RBP9.04□□□□□ -0.96
USP3-211ENST00000559257 CENPAP49450 140 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 HNRNPFP52597 415 aaKnown RBP9.04□□□□□ -0.96
USP3-211ENST00000559257 EVA1CP58658 441 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 GNA13Q14344 377 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 SF3B3Q15393 1217 aaKnown RBP9.04□□□□□ -0.96
USP3-211ENST00000559257 STILQ15468 1287 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 CCDC6Q16204 474 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 TJAP1Q5JTD0 557 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 BORAQ6PGQ7 559 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 LRRC74BQ6ZQY2 392 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 TMTC3Q6ZXV5 915 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 SNX32Q86XE0 403 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 IFNL1Q8IU54 200 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 NATD1Q8N6N6 113 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 USHBP1Q8N6Y0 703 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 ATP6V0D2Q8N8Y2 350 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 ABTB2Q8N961 1025 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 FAM13CQ8NE31 585 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 CEP70Q8NHQ1 597 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 KCNG4Q8TDN1 519 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 RUFY2Q8WXA3 655 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 FBXW7Q969H0 707 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 RMDN1Q96DB5 314 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 SGF29Q96ES7 293 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 RIOK1Q9BRS2 568 aaKnown RBP9.04□□□□□ -0.96
USP3-211ENST00000559257 LSG1Q9H089 658 aaKnown RBP9.04□□□□□ -0.96
USP3-211ENST00000559257 SCPEP1Q9HB40 452 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 USP29Q9HBJ7 922 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 GABBR1Q9UBS5 961 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 ZNF212Q9UDV6 495 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 PCDHGA11Q9Y5H2 935 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 NFS1Q9Y697 457 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 ACEP12821 1306 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 UMODL1Q5DID0 1318 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 A0A1B0GTH6 734 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 ARHGAP10A1A4S6 786 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 RGS13O14921 159 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 ICMTO60725 284 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 KLHL2O95198 593 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 MAP3K6O95382 1288 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 GM2AP17900 193 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 CDH3P22223 829 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 TBXAS1P24557 533 aaPredicted RBP9.04□□□□□ -0.96
USP3-211ENST00000559257 CBX5P45973 191 aa9.04□□□□□ -0.96
USP3-211ENST00000559257 RPL26P61254 145 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms