RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KIAA1841Q6NSI8 718 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 ESRP1Q6NXG1 681 aaKnown RBP6.81□□□□□ -1.32
VPS13C-208ENST00000559119 PCSK4Q6UW60 755 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 Q6ZPA2 131 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 HTR3DQ70Z44 454 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 KANSL1Q7Z3B3 1105 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 MRGPREQ86SM8 312 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 ZZZ3Q8IYH5 903 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 RPUSD2Q8IZ73 545 aaKnown RBP6.81□□□□□ -1.32
VPS13C-208ENST00000559119 ST8SIA2Q92186 375 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 MYL10Q9BUA6 226 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 OSBPL6Q9BZF3 934 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 SPO11Q9Y5K1 396 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 MTSS1O43312 755 aa6.8□□□□□ -1.32
VPS13C-208ENST00000559119 BMS1Q14692 1282 aaKnown RBP6.8□□□□□ -1.32
VPS13C-208ENST00000559119 HIST1H2AHQ96KK5 128 aa6.8□□□□□ -1.32
VPS13C-208ENST00000559119 HIST1H2AJQ99878 128 aa6.8□□□□□ -1.32
VPS13C-208ENST00000559119 NOL10Q9BSC4 688 aaKnown RBP6.8□□□□□ -1.32
VPS13C-208ENST00000559119 POFUT1Q9H488 388 aa6.8□□□□□ -1.32
VPS13C-208ENST00000559119 TRPS1Q9UHF7 1281 aa6.8□□□□□ -1.32
VPS13C-208ENST00000559119 ZKSCAN5Q9Y2L8 839 aa6.8□□□□□ -1.32
VPS13C-208ENST00000559119 OPHN1O60890 802 aa6.79□□□□□ -1.32
VPS13C-208ENST00000559119 SDSP20132 328 aa6.79□□□□□ -1.32
VPS13C-208ENST00000559119 SQSTM1Q13501 440 aa6.79□□□□□ -1.32
VPS13C-208ENST00000559119 APBB1IPQ7Z5R6 666 aaPredicted RBP6.79□□□□□ -1.32
VPS13C-208ENST00000559119 RTF1Q92541 710 aaKnown RBP6.79□□□□□ -1.32
VPS13C-208ENST00000559119 LENG9Q96B70 501 aa6.79□□□□□ -1.32
VPS13C-208ENST00000559119 MRFAP1L1Q96HT8 127 aa6.79□□□□□ -1.32
VPS13C-208ENST00000559119 EPC1Q9H2F5 836 aa6.79□□□□□ -1.32
VPS13C-208ENST00000559119 OXSMQ9NWU1 459 aa6.79□□□□□ -1.32
VPS13C-208ENST00000559119 NRP1O14786 923 aa6.78□□□□□ -1.32
VPS13C-208ENST00000559119 PPP1R12AO14974 1030 aaPredicted RBP6.78□□□□□ -1.32
VPS13C-208ENST00000559119 HK1P19367 917 aa6.78□□□□□ -1.32
VPS13C-208ENST00000559119 DCAF17Q5H9S7 520 aaPredicted RBP6.78□□□□□ -1.32
VPS13C-208ENST00000559119 LY6G5CQ5SRR4 150 aa6.78□□□□□ -1.32
VPS13C-208ENST00000559119 C1QL3Q5VWW1 255 aa6.78□□□□□ -1.32
VPS13C-208ENST00000559119 UNQ6494/PRO21346Q6UXR6 183 aa6.78□□□□□ -1.32
VPS13C-208ENST00000559119 FAM193BQ96PV7 902 aaPredicted RBP6.78□□□□□ -1.32
VPS13C-208ENST00000559119 IFT57Q9NWB7 429 aa6.78□□□□□ -1.32
VPS13C-208ENST00000559119 SORCS3Q9UPU3 1222 aa6.78□□□□□ -1.32
VPS13C-208ENST00000559119 GAS7O60861 476 aa6.77□□□□□ -1.33
VPS13C-208ENST00000559119 PPFIA4O75335 1185 aa6.77□□□□□ -1.33
VPS13C-208ENST00000559119 STC2O76061 302 aa6.77□□□□□ -1.33
VPS13C-208ENST00000559119 RECQL4O94761 1208 aa6.77□□□□□ -1.33
VPS13C-208ENST00000559119 TGM1P22735 817 aa6.77□□□□□ -1.33
VPS13C-208ENST00000559119 PTPAQ15257 358 aa6.77□□□□□ -1.33
VPS13C-208ENST00000559119 CREB3L3Q68CJ9 461 aa6.77□□□□□ -1.33
VPS13C-208ENST00000559119 NAIF1Q69YI7 327 aaPredicted RBP6.77□□□□□ -1.33
VPS13C-208ENST00000559119 ING3Q9NXR8 418 aa6.77□□□□□ -1.33
VPS13C-208ENST00000559119 MAGEC2Q9UBF1 373 aaPredicted RBP6.77□□□□□ -1.33
VPS13C-208ENST00000559119 FZD1Q9UP38 647 aa6.77□□□□□ -1.33
VPS13C-208ENST00000559119 A0A0A6YYK5 440 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-208ENST00000559119 PCDH8O95206 1070 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 ASMTLO95671 621 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 ABHD16AO95870 558 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 GCP02774 474 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 BMP5P22003 454 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 CD40P25942 277 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 FAM214AQ32MH5 1076 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 PASD1Q8IV76 773 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 CPT1CQ8TCG5 803 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 PROKR1Q8TCW9 393 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 SH3TC2Q8TF17 1288 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 CPPED1Q9BRF8 314 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-208ENST00000559119 SOX7Q9BT81 388 aa6.76□□□□□ -1.33
VPS13C-208ENST00000559119 ST20-MTHFSA0A0A6YYL1 179 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 HOXA3O43365 443 aaPredicted RBP6.75□□□□□ -1.33
VPS13C-208ENST00000559119 RFPL3O75679 317 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 ALDH1A2O94788 518 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 RHOBTB3O94955 611 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 ITGB1P05556 798 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 GAAP10253 952 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 ATP2A2P16615 1042 aaKnown RBP6.75□□□□□ -1.33
VPS13C-208ENST00000559119 PABPC4Q13310 644 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS13C-208ENST00000559119 MBNL2Q5VZF2 373 aaKnown RBP6.75□□□□□ -1.33
VPS13C-208ENST00000559119 DPY19L2P1Q6NXN4 242 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 KCNV1Q6PIU1 500 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 RHOUQ7L0Q8 258 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 UNC5BQ8IZJ1 945 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 OR5M3Q8NGP4 307 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 ZMAT4Q9H898 229 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 PODXL2Q9NZ53 605 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 H2AFY2Q9P0M6 372 aaPredicted RBP6.75□□□□□ -1.33
VPS13C-208ENST00000559119 PCDHB6Q9Y5E3 794 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 MYPNQ86TC9 1320 aa6.75□□□□□ -1.33
VPS13C-208ENST00000559119 GRXCR1A8MXD5 290 aa6.74□□□□□ -1.33
VPS13C-208ENST00000559119 SCAF4O95104 1147 aaKnown RBP6.74□□□□□ -1.33
VPS13C-208ENST00000559119 GYPEP15421 78 aa6.74□□□□□ -1.33
VPS13C-208ENST00000559119 NEK4P51957 841 aa6.74□□□□□ -1.33
VPS13C-208ENST00000559119 COL10A1Q03692 680 aa6.74□□□□□ -1.33
VPS13C-208ENST00000559119 VRK3Q8IV63 474 aa6.74□□□□□ -1.33
VPS13C-208ENST00000559119 FERMT2Q96AC1 680 aa6.74□□□□□ -1.33
VPS13C-208ENST00000559119 MLST8Q9BVC4 326 aa6.74□□□□□ -1.33
VPS13C-208ENST00000559119 INTS7Q9NVH2 962 aaKnown RBP6.74□□□□□ -1.33
VPS13C-208ENST00000559119 EIF2B4Q9UI10 523 aaKnown RBP6.74□□□□□ -1.33
VPS13C-208ENST00000559119 TRIM24O15164 1050 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 NR4A1P22736 598 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 KRTAP1-1Q07627 177 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 TIGD2Q4W5G0 525 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 LRRC55Q6ZSA7 311 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms