RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DNAJC3Q13217 504 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 SUPT20HQ8NEM7 779 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 WDR66Q8TBY9 1149 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 SPOCK2Q92563 424 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 SYN2Q92777 582 aaPredicted RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 SAAL1Q96ER3 474 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 RMDN2Q96LZ7 410 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 NAP1L3Q99457 506 aaPredicted RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 OSBPL1AQ9BXW6 950 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 KCTD10Q9H3F6 313 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 ZNF219Q9P2Y4 722 aaPredicted RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 TTC7AQ9ULT0 858 aaPredicted RBP12.2□□□□□ -0.46
LDLR-208ENST00000558518 COG5Q9UP83 839 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 FRMD4BQ9Y2L6 1034 aa12.2□□□□□ -0.46
LDLR-208ENST00000558518 PPP1R11O60927 126 aaPredicted RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 EEF2P13639 858 aaKnown RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 MSH2P43246 934 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 TTC27Q6P3X3 843 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 HS2ST1Q7LGA3 356 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 SPATA21Q7Z572 469 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 KAT5Q92993 513 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 ERP27Q96DN0 273 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 IFT74Q96LB3 600 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 ZNF570Q96NI8 536 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 DNAJC8O75937 253 aaPredicted RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 ATP2A2P16615 1042 aaKnown RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 KRT15P19012 456 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 SOX5P35711 763 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 MXRA7P84157 204 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 CBWD6Q4V339 395 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 CBWD3Q5JTY5 395 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 CBWD5Q5RIA9 395 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 KAZNQ674X7 775 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 EXOC3L1Q86VI1 746 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 RPUSD2Q8IZ73 545 aaKnown RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 ARMC2Q8NEN0 867 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 SLC35C1Q96A29 364 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 ZNF317Q96PQ6 595 aaPredicted RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 PITPNM3Q9BZ71 974 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 METTL5Q9NRN9 209 aaKnown RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 SPATS2LQ9NUQ6 558 aaKnown RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 DCTN4Q9UJW0 460 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 MTUS1Q9ULD2 1270 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 KIAA0391O15091 583 aaKnown RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 PYGMP11217 842 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 GSTO1P78417 241 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 ADCY2Q08462 1091 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 PDIA5Q14554 519 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 C4orf33Q8N1A6 199 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 NEDD1Q8NHV4 660 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 ERMNQ8TAM6 284 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 ATXN2LQ8WWM7 1075 aaKnown RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 ANO3Q9BYT9 981 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 ANKRD2Q9GZV1 360 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 CDC42EP4Q9H3Q1 356 aaKnown RBP12.19□□□□□ -0.46
LDLR-208ENST00000558518 KLHL11Q9NVR0 708 aa12.19□□□□□ -0.46
LDLR-208ENST00000558518 ATXN2Q99700 1313 aaKnown RBP12.18□□□□□ -0.46
LDLR-208ENST00000558518 CICQ96RK0 1608 aaPredicted RBP12.18□□□□□ -0.46
LDLR-208ENST00000558518 C21orf2O43822 256 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 SNX3O60493 162 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 CFBP00751 764 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 KRT5P13647 590 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 POLD1P28340 1107 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 PTENP60484 403 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 COPS2P61201 443 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 MYL7Q01449 175 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 SATB1Q01826 763 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 AUHQ13825 339 aaKnown RBP12.18□□□□□ -0.46
LDLR-208ENST00000558518 GIT2Q14161 759 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 ZYXQ15942 572 aaKnown RBP12.18□□□□□ -0.46
LDLR-208ENST00000558518 SEPT7Q16181 437 aaKnown RBP12.18□□□□□ -0.46
LDLR-208ENST00000558518 SGO2Q562F6 1265 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 ODR4Q5SWX8 454 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 FITM2Q8N6M3 262 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 FBF1Q8TES7 1133 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 RABGAP1Q9Y3P9 1069 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 COL5A2P05997 1499 aaPredicted RBP12.18□□□□□ -0.46
LDLR-208ENST00000558518 KDM3AQ9Y4C1 1321 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 RARAP10276 462 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 LMNB1P20700 586 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 CHKAP35790 457 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 MMP14P50281 582 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 POLE2P56282 527 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 EPHA7Q15375 998 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 CNGA2Q16280 664 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 TMEM119Q4V9L6 283 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 ANKRD20A2Q5SQ80 823 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 ANKRD20A1Q5TYW2 823 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 ANKRD20A3Q5VUR7 823 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 TPTE2Q6XPS3 522 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 DTX3LQ8TDB6 740 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 FER1L4A9Z1Z3 1794 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 CASZ1Q86V15 1759 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 NUP188Q5SRE5 1749 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 ANKRD62A6NC57 917 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 RIPK2O43353 540 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 PPFIA2O75334 1257 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 KRT17Q04695 432 aa12.18□□□□□ -0.46
LDLR-208ENST00000558518 SETDB1Q15047 1291 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms