RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 NGRNQ9NPE2 291 aaKnown RBP3.87□□□□□ -1.79
TRAV28-201ENST00000557548 CASS4Q9NQ75 786 aa3.87□□□□□ -1.79
TRAV28-201ENST00000557548 DMRT3Q9NQL9 472 aa3.87□□□□□ -1.79
TRAV28-201ENST00000557548 TRMT13Q9NUP7 481 aaKnown RBP3.87□□□□□ -1.79
TRAV28-201ENST00000557548 TERF2IPQ9NYB0 399 aa3.87□□□□□ -1.79
TRAV28-201ENST00000557548 PIM2Q9P1W9 311 aa3.87□□□□□ -1.79
TRAV28-201ENST00000557548 TMEM59LQ9UK28 342 aa3.87□□□□□ -1.79
TRAV28-201ENST00000557548 USP18Q9UMW8 372 aa3.87□□□□□ -1.79
TRAV28-201ENST00000557548 CORO2BQ9UQ03 480 aa3.87□□□□□ -1.79
TRAV28-201ENST00000557548 STXBP5LQ9Y2K9 1186 aa3.87□□□□□ -1.79
TRAV28-201ENST00000557548 NR2E3Q9Y5X4 410 aa3.87□□□□□ -1.79
TRAV28-201ENST00000557548 NOTOA8MTQ0 251 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 KPNA5O15131 536 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 FAHP16930 419 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 TYRP1P17643 537 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 HOXA10P31260 410 aaPredicted RBP3.86□□□□□ -1.79
TRAV28-201ENST00000557548 ZP2Q05996 745 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 DBPQ10586 325 aaPredicted RBP3.86□□□□□ -1.79
TRAV28-201ENST00000557548 NOLC1Q14978 699 aaKnown RBP eCLIP3.86□□□□□ -1.79
TRAV28-201ENST00000557548 CCDC157Q569K6 752 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 SPTY2D1Q68D10 685 aaPredicted RBP3.86□□□□□ -1.79
TRAV28-201ENST00000557548 CCDC174Q6PII3 467 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 APOA5Q6Q788 366 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 CBLL1Q75N03 491 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 ZNF354CQ86Y25 554 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 KRT78Q8N1N4 520 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 OR2C3Q8N628 320 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 TTLL11Q8NHH1 800 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 DEPTORQ8TB45 409 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 DPF2Q92785 391 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 RGMAQ96B86 450 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 ALPK1Q96QP1 1244 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 SELENOOQ9BVL4 669 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 PDGFDQ9GZP0 370 aaPredicted RBP3.86□□□□□ -1.79
TRAV28-201ENST00000557548 NUP62CLQ9H1M0 184 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 MTG2Q9H4K7 406 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 WDR26Q9H7D7 661 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 KMT5AQ9NQR1 393 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 GPRC5BQ9NZH0 403 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 ARHGAP28Q9P2N2 729 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 EVLQ9UI08 416 aaPredicted RBP3.86□□□□□ -1.79
TRAV28-201ENST00000557548 VAV3Q9UKW4 847 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 LZTS1Q9Y250 596 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 MYPNQ86TC9 1320 aa3.86□□□□□ -1.79
TRAV28-201ENST00000557548 ZC3H12DA2A288 527 aaKnown RBP3.85□□□□□ -1.79
TRAV28-201ENST00000557548 PRR19A6NJB7 356 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 RHPN2P1A8MT19 583 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 NFIBO00712 420 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 OPHN1O60890 802 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 MPIG6BO95866 241 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 FTLP02792 175 aaPredicted RBP3.85□□□□□ -1.79
TRAV28-201ENST00000557548 FUT4P22083 530 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 PTGS1P23219 599 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 TNFSF4P23510 183 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 THBS2P35442 1172 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 MCAMP43121 646 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 GALK1P51570 392 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 MAP2K6P52564 334 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 CHRNEQ04844 493 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 BTKQ06187 659 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 LMOD3Q0VAK6 560 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 BNIP3Q12983 259 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 POLD3Q15054 466 aaPredicted RBP3.85□□□□□ -1.79
TRAV28-201ENST00000557548 MUM1L1Q5H9M0 696 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 CD276Q5ZPR3 534 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 KLHDC10Q6PID8 442 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 LRSAM1Q6UWE0 723 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 GAREM2Q75VX8 874 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 MIGA2Q7L4E1 593 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 MAEAQ7L5Y9 396 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 ZDHHC13Q8IUH4 622 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 NKAPQ8N5F7 415 aaKnown RBP3.85□□□□□ -1.79
TRAV28-201ENST00000557548 PDZD8Q8NEN9 1154 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 PLBD2Q8NHP8 589 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 KLHDC4Q8TBB5 520 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 ATXN2LQ8WWM7 1075 aaKnown RBP3.85□□□□□ -1.79
TRAV28-201ENST00000557548 GAB3Q8WWW8 586 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 RSAD2Q8WXG1 361 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 RPGRQ92834 1020 aaKnown RBP3.85□□□□□ -1.79
TRAV28-201ENST00000557548 FATE1Q969F0 183 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 HDAC10Q969S8 669 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 KIAA1191Q96A73 305 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 NT5C1BQ96P26 610 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 ADI1Q9BV57 179 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 AMNQ9BXJ7 453 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 WDR12Q9GZL7 423 aaKnown RBP3.85□□□□□ -1.79
TRAV28-201ENST00000557548 VPS11Q9H270 941 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 ARMT1Q9H993 441 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 CERS4Q9HA82 394 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 ARFGAP3Q9NP61 516 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 SLC39A2Q9NP94 309 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 LMCD1Q9NZU5 365 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 CDC23Q9UJX2 597 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 NUDT5Q9UKK9 219 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 DENND2AQ9ULE3 1009 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 GTF2A1LQ9UNN4 478 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 PCDHB6Q9Y5E3 794 aa3.85□□□□□ -1.79
TRAV28-201ENST00000557548 FITM1A5D6W6 292 aa3.84□□□□□ -1.79
TRAV28-201ENST00000557548 LRRC14BA6NHZ5 514 aa3.84□□□□□ -1.79
TRAV28-201ENST00000557548 NCK2O43639 380 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms