RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 TMOD1P28289 359 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 CLCN4P51793 760 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 SETQ01105 290 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 GIT2Q14161 759 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 BMS1Q14692 1282 aaKnown RBP9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 RTN1Q16799 776 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 CREB3L3Q68CJ9 461 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 KIAA2013Q8IYS2 634 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 ZNF713Q8N859 430 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 TMEM87AQ8NBN3 555 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 RSAD2Q8WXG1 361 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 RIN2Q8WYP3 895 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 KLHL5Q96PQ7 755 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 GBP3Q9H0R5 595 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 FAM217BQ9NTX9 383 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 TBC1D22BQ9NU19 505 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 RBM28Q9NW13 759 aaKnown RBP9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 DACT1Q9NYF0 836 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 TCEAL9Q9UHQ7 104 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 SAMM50Q9Y512 469 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 USP24Q9UPU5 2620 aa9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 PDCD11Q14690 1871 aaKnown RBP9.23□□□□□ -0.93
CCDC88C-214ENST00000557507 CACNA1GO43497 2377 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 SPAG17Q6Q759 2223 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 A0A087WZ62 844 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 TMEM150BA6NC51 233 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 SPDYE4A6NLX3 237 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 WDR64B1ANS9 1081 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 LMNAP02545 664 aaKnown RBP9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 CDC27P30260 824 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 NECTIN1Q15223 517 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 TARBP2Q15633 366 aaKnown RBP9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 LETM2Q2VYF4 491 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 PRR16Q569H4 304 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 NOMO2Q5JPE7 1267 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 TWF2Q6IBS0 349 aaKnown RBP9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 GLB1LQ6UWU2 654 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 DGLUCYQ7Z3D6 616 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 PPFIBP1Q86W92 1011 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 ZNF280BQ86YH2 543 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 ZNF710Q8N1W2 664 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 KCNG4Q8TDN1 519 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 FDXACB1Q9BRP7 624 aaPredicted RBP9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 TRAIPQ9BWF2 469 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 GLT8D2Q9H1C3 349 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 TBC1D17Q9HA65 648 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 FAM105AQ9NUU6 356 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 IGSF9Q9P2J2 1179 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 CA14Q9ULX7 337 aa9.22□□□□□ -0.93
CCDC88C-214ENST00000557507 ESYT2A0FGR8 921 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 GOLGA8AA7E2F4 631 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 GOLGA8BA8MQT2 603 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 ZBTB43O43298 467 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 CHMP2AO43633 222 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 EDIL3O43854 480 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 LILRB3O75022 631 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 OFD1O75665 1012 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 DDHD2O94830 711 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 MYBP10242 640 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 KLRC2P26717 231 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 AFF1P51825 1210 aaKnown RBP9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 RNASELQ05823 741 aaKnown RBP9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 TBC1D8BQ0IIM8 1120 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 PFKFB3Q16875 520 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 SYNE3Q6ZMZ3 975 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 C15orf39Q6ZRI6 1047 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 REXO1Q8N1G1 1221 aaKnown RBP9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 CMASQ8NFW8 434 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 GJA10Q969M2 543 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 MYADMQ96S97 322 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 CEP89Q96ST8 783 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 SH2D3AQ9BRG2 576 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 GCOM2Q9BZD3 368 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 MAN1C1Q9NR34 630 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 CHST12Q9NRB3 414 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 DISC1Q9NRI5 854 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 DLGAP2Q9P1A6 1054 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 WNT16Q9UBV4 365 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 SEPT9Q9UHD8 586 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 PIN4Q9Y237 131 aaKnown RBP9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 CLUHO75153 1309 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 TICRRQ7Z2Z1 1910 aa9.21□□□□□ -0.94
CCDC88C-214ENST00000557507 COL4A2P08572 1712 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 IGKV6-21A0A0C4DH24 114 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 STK25O00506 426 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 C2CD2LO14523 706 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 INPPL1O15357 1258 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 MSH4O15457 936 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 RFPL2O75678 378 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 STBD1O95210 358 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 DCNP07585 359 aaKnown RBP9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 SFPQP23246 707 aaKnown RBP eCLIP9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 GBP2P32456 591 aaPredicted RBP9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 CIITAP33076 1130 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 MTERF2Q49AM1 385 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 SPECC1Q5M775 1068 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 AGMOQ6ZNB7 445 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 KSR1Q8IVT5 923 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 DCLK2Q8N568 766 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 GPR152Q8TDT2 470 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms