RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ANKRD1Q15327 319 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 EPHA7Q15375 998 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 NCAPH2Q6IBW4 605 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 SYCE2Q6PIF2 218 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 GLB1LQ6UWU2 654 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 POTEDQ86YR6 584 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 SLFN12Q8IYM2 578 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 MRPL43Q8N983 215 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 ZNF579Q8NAF0 562 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 HAS1Q92839 578 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 CASP10Q92851 521 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 PGBD4Q96DM1 585 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 LXNQ9BS40 222 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 APOL5Q9BWW9 433 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 S1PR5Q9H228 398 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 KCNH6Q9H252 994 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 DHX33Q9H6R0 707 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 IFT122Q9HBG6 1241 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 WRAP73Q9P2S5 460 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 ORC3Q9UBD5 711 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 INPP5FQ9Y2H2 1132 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 PPME1Q9Y570 386 aa12.39□□□□□ -0.43
CCDC88C-213ENST00000557455 WDFY4Q6ZS81 3184 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 ZNF318Q5VUA4 2279 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 C2orf71A6NGG8 1288 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 ZNF623O75123 536 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 CTDNEP1O95476 244 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 CXCL14O95715 111 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 SRGAP2CP0DJJ0 459 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 YWHABP31946 246 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 KRT2P35908 639 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 RFC5P40937 340 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 AK2P54819 239 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 ANAPC15P60006 121 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 ZXDAP98168 799 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 NOMO2Q5JPE7 1267 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 TRIM67Q6ZTA4 783 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 OTUD6AQ7L8S5 288 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 SRGAP1Q7Z6B7 1085 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 C4orf19Q8IY42 314 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 TCP11Q8WWU5 503 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 PRPF31Q8WWY3 499 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 PSPC1Q8WXF1 523 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 TMEM143Q96AN5 459 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 BRMS1Q9HCU9 246 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 BMP2KQ9NSY1 1161 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 AGPAT5Q9NUQ2 364 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 TBC1D13Q9NVG8 400 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 RGL1Q9NZL6 768 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 HCFC2Q9Y5Z7 792 aa12.38□□□□□ -0.43
CCDC88C-213ENST00000557455 TMEM221A6NGB7 291 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 MEIS3P2A8K0S8 358 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 M0R296 226 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 ASAP2O43150 1006 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 GAS2O43903 313 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 CLASP2O75122 1294 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 OFD1O75665 1012 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 GALTP07902 379 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 CYP4A11Q02928 519 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 LAMTOR4Q0VGL1 99 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 NR5A1Q13285 461 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 CTTNQ14247 550 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 EMC2Q15006 297 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 TPRNQ4KMQ1 711 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 XKR9Q5GH70 373 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 EARS2Q5JPH6 523 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 CES5AQ6NT32 575 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 BMP8AQ7Z5Y6 402 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 VPS52Q8N1B4 723 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 TMEM87AQ8NBN3 555 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 URGCPQ8TCY9 931 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 PBXIP1Q96AQ6 731 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 IGSF21Q96ID5 467 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 DYDC2Q96IM9 177 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 FBXL18Q96ME1 805 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 GBP3Q9H0R5 595 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 ZBP1Q9H171 429 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 ZSWIM4Q9H7M6 989 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 NRDE2Q9H7Z3 1164 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 PCDHB2Q9Y5E7 798 aa12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 TDRD15B5MCY1 1934 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-213ENST00000557455 MYO10Q9HD67 2058 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 FAM205CA6NFA0 338 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 CTSAP10619 480 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 FDPSP14324 419 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 SP100P23497 879 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 ITIH3Q06033 890 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 SPIRE1Q08AE8 756 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 GIT2Q14161 759 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 DDX53Q86TM3 631 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 FERMT3Q86UX7 667 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 TMEM173Q86WV6 379 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 TPH2Q8IWU9 490 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 NECAB1Q8N987 351 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 RNF149Q8NC42 400 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 AUTS2Q8WXX7 1259 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 FAM193BQ96PV7 902 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 MTRQ99707 1265 aa12.36□□□□□ -0.43
CCDC88C-213ENST00000557455 MINDY3Q9H8M7 445 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms