RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 AGPAT1Q99943 283 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 PLCD4Q9BRC7 762 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 GPR88Q9GZN0 384 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 WNT8AQ9H1J5 351 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 USP40Q9NVE5 1235 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 GRHL1Q9NZI5 618 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 MTUS1Q9ULD2 1270 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 NR2E1Q9Y466 385 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 RSPH10B2B2RC85 870 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 MSH4O15457 936 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 RSPH10BP0C881 870 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 ZNF131P52739 623 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 MYL7Q01449 175 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 SEL1L2Q5TEA6 688 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 HHIPL2Q6UWX4 724 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 FBXO11Q86XK2 927 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 MYCT1Q8N699 235 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 GBP7Q8N8V2 638 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-231ENST00000557433 RNF25Q96BH1 459 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-231ENST00000557433 CRAMP1Q96RY5 1269 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 SELENOSQ9BQE4 189 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 ADAM7Q9H2U9 754 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 ALG6Q9Y672 507 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 IGSF9BQ9UPX0 1349 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 FAM86B1E9PN63 330 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 SHBGP04278 402 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 FAM86B2P0C5J1 330 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 KRT13P13646 458 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 ABCB4P21439 1286 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 ATP5DP30049 168 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 PDE6CP51160 858 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 GTF2IP78347 998 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 CETN1Q12798 172 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 SPRED3Q2MJR0 410 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 C1orf186Q6ZWK4 172 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 TRMT10CQ7L0Y3 403 aaKnown RBP17.56■□□□□ 0.4
SHMT2-231ENST00000557433 MDM1Q8TC05 714 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 FBXO25Q8TCJ0 367 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 TMEM174Q8WUU8 243 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 HSD17B14Q9BPX1 270 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 ZSWIM1Q9BR11 485 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 THAP2Q9H0W7 228 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 HOMER3Q9NSC5 361 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 DONSONQ9NYP3 566 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 POLLQ9UGP5 575 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 SNX24Q9Y343 169 aa17.56■□□□□ 0.4
SHMT2-231ENST00000557433 RPTORQ8N122 1335 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 PIK3CDO00329 1044 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 GPC5P78333 572 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 ELF3P78545 371 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-231ENST00000557433 CTTNQ14247 550 aaKnown RBP17.55■□□□□ 0.4
SHMT2-231ENST00000557433 SLC29A2Q14542 456 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 CCDC63Q8NA47 563 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 GMCL1P1Q8NEA9 526 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 ALG3Q92685 438 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 GLG1Q92896 1179 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 ARHGEF26Q96DR7 871 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 AZI2Q9H6S1 392 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 VEZTQ9HBM0 779 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 ERVK-5Q9HDB9 667 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 ZNF720Q7Z2F6 126 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 TRPM8Q7Z2W7 1104 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 FAM228AQ86W67 206 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 PRELID2Q8N945 189 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 GMCL1Q96IK5 515 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 AGPAT3Q9NRZ7 376 aa17.55■□□□□ 0.4
SHMT2-231ENST00000557433 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.55■□□□□ 0.4
SHMT2-231ENST00000557433 BTAF1O14981 1849 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 AFF2P51816 1311 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 PASKQ96RG2 1323 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 A0A1B0GUA9 196 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 RASGRF2O14827 1237 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 ATP6V1G2O95670 118 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 ZNF76P36508 570 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 PPP2R5CQ13362 524 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 ALCAMQ13740 583 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 C12orf50Q8NA57 414 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-231ENST00000557433 SLCO2A1Q92959 643 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 ART4Q93070 314 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 CTTNBP2NLQ9P2B4 639 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 COG5Q9UP83 839 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 PCDHA3Q9Y5H8 950 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 LRRC37AA6NMS7 1700 aa17.54■□□□□ 0.4
SHMT2-231ENST00000557433 C6orf229H3BNL8 230 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 RIPK2O43353 540 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 RTN2O75298 545 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 GZMAP12544 262 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 EEF2P13639 858 aaKnown RBP17.53■□□□□ 0.4
SHMT2-231ENST00000557433 RPL21P46778 160 aaKnown RBP17.53■□□□□ 0.4
SHMT2-231ENST00000557433 CYP4A11Q02928 519 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 KCNA1Q09470 495 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 BFSP1Q12934 665 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 SLC51AQ86UW1 340 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 CEP57Q86XR8 500 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 FAM178BQ8IXR5 827 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 LRRC34Q8IZ02 419 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 SCLT1Q96NL6 688 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 SYNPO2Q9UMS6 1093 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 USP20Q9Y2K6 914 aa17.53■□□□□ 0.4
SHMT2-231ENST00000557433 LTBP1Q14766 1721 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms