RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ZNF76P36508 570 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 KRT17Q04695 432 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 TBC1D8BQ0IIM8 1120 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 NTRK3Q16288 839 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 PPP1R18Q6NYC8 613 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 CAVIN1Q6NZI2 390 aaKnown RBP14.06□□□□□ -0.16
SHMT2-230ENST00000557427 ZC3H14Q6PJT7 736 aaKnown RBP14.06□□□□□ -0.16
SHMT2-230ENST00000557427 C1orf210Q8IVY1 113 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 SLC39A11Q8N1S5 342 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 ZNF713Q8N859 430 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-230ENST00000557427 GLG1Q92896 1179 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 GPRASP2Q96D09 838 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 ZNF558Q96NG5 402 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 SMARCAD1Q9H4L7 1026 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 TBC1D17Q9HA65 648 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 ATP6V0A4Q9HBG4 840 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 JADE2Q9NQC1 790 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 TMEM161AQ9NX61 479 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 SPG21Q9NZD8 308 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 ST3GAL5Q9UNP4 418 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 DENND3A2RUS2 1198 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 CPLX1O14810 134 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 CTDNEP1O95476 244 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 CXCL14O95715 111 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 TGM1P22735 817 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 SSRP1Q08945 709 aaKnown RBP14.05□□□□□ -0.16
SHMT2-230ENST00000557427 MTMR1Q13613 665 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 PLCB4Q15147 1175 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 VARS2Q5ST30 1063 aaKnown RBP14.05□□□□□ -0.16
SHMT2-230ENST00000557427 GPR149Q86SP6 731 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 FAM184AQ8NB25 1140 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 GIMAP8Q8ND71 665 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-230ENST00000557427 AUTS2Q8WXX7 1259 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 SYAP1Q96A49 352 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-230ENST00000557427 ACSF2Q96CM8 615 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-230ENST00000557427 CDHR1Q96JP9 859 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 MXRA8Q9BRK3 442 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 ANO3Q9BYT9 981 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 TMEM117Q9H0C3 514 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 GLT8D2Q9H1C3 349 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 C6orf50Q9HD87 102 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 DZANK1Q9NVP4 752 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 CA14Q9ULX7 337 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 GINS2Q9Y248 185 aa14.05□□□□□ -0.16
SHMT2-230ENST00000557427 SMIM35A0A1B0GVV1 85 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 DTNBO60941 627 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 RPS6KA5O75582 802 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 HOXB3P14651 431 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-230ENST00000557427 IFNAR1P17181 557 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 PPM1AP35813 382 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 UBE2HP62256 183 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 KRT85P78386 507 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 DSC3Q14574 896 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 ZSCAN23Q3MJ62 389 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 OTOP3Q7RTS5 596 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 NME8Q8N427 588 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 CCDC12Q8WUD4 166 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-230ENST00000557427 ZSCAN16Q9H4T2 348 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-230ENST00000557427 ELAC1Q9H777 363 aaKnown RBP14.04□□□□□ -0.16
SHMT2-230ENST00000557427 GRPEL1Q9HAV7 217 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 KCNH7Q9NS40 1196 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 VPS54Q9P1Q0 977 aa14.04□□□□□ -0.16
SHMT2-230ENST00000557427 C2orf16Q68DN1 1984 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 NT5C1B-RDH14C9J2C7 533 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 MAFGO15525 162 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 LRRN2O75325 713 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 SDHBP21912 280 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 CLK2P49760 499 aaKnown RBP14.03□□□□□ -0.16
SHMT2-230ENST00000557427 DNM1Q05193 864 aaKnown RBP14.03□□□□□ -0.16
SHMT2-230ENST00000557427 RESTQ13127 1097 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 FOXD4L6Q3SYB3 417 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-230ENST00000557427 CEP55Q53EZ4 464 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 MTHFD1LQ6UB35 978 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 FOXD4L3Q6VB84 417 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-230ENST00000557427 CCDC149Q6ZUS6 474 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 GAS2L3Q86XJ1 694 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 SLC44A3Q8N4M1 653 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 RNF26Q9BY78 433 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-230ENST00000557427 ZMYND12Q9H0C1 365 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 TMEM63CQ9P1W3 806 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 IGSF9Q9P2J2 1179 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 SIT1Q9Y3P8 196 aa14.03□□□□□ -0.16
SHMT2-230ENST00000557427 NID2Q14112 1375 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 H3BQV1 296 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 KINO60870 393 aaKnown RBP14.02□□□□□ -0.17
SHMT2-230ENST00000557427 GADD45BO75293 160 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-230ENST00000557427 XRCC6P12956 609 aaKnown RBP eCLIP14.02□□□□□ -0.17
SHMT2-230ENST00000557427 GNA11P29992 359 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 CA8P35219 290 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 NLRP5P59047 1200 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 AP3B2Q13367 1082 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 CLLU1OSQ5K130 101 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 PHLDB3Q6NSJ2 640 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 FAM228AQ86W67 206 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 TMEM173Q86WV6 379 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-230ENST00000557427 TRIM22Q8IYM9 498 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 KIAA0319LQ8IZA0 1049 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 REXO1Q8N1G1 1221 aaKnown RBP14.02□□□□□ -0.17
SHMT2-230ENST00000557427 GPR152Q8TDT2 470 aa14.02□□□□□ -0.17
SHMT2-230ENST00000557427 RTKNQ9BST9 563 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms