RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 NPR3P17342 541 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 AOC1P19801 751 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 MTERF2Q49AM1 385 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 XKR3Q5GH77 459 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 LRCH2Q5VUJ6 765 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 CCDC149Q6ZUS6 474 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 ERMP1Q7Z2K6 904 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 RDM1Q8NG50 284 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 BCL7CQ8WUZ0 217 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-223ENST00000556689 SLC5A5Q92911 643 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 PGBD4Q96DM1 585 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 KLHL5Q96PQ7 755 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 RTP3Q9BQQ7 232 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 GBP3Q9H0R5 595 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 KCNK12Q9HB15 430 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 FAM105AQ9NUU6 356 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 SUCLA2Q9P2R7 463 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-223ENST00000556689 SEPT9Q9UHD8 586 aaPredicted RBP14.24□□□□□ -0.13
SHMT2-223ENST00000556689 FBXL21Q9UKT6 434 aa14.24□□□□□ -0.13
SHMT2-223ENST00000556689 PIN4Q9Y237 131 aaKnown RBP14.24□□□□□ -0.13
SHMT2-223ENST00000556689 IGKV6-21A0A0C4DH24 114 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 EDIL3O43854 480 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 ID4P47928 161 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 SLC11A1P49279 550 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 RAB27AP51159 221 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 CLCN4P51793 760 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 PTPN14Q15678 1187 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 CWF19L1Q69YN2 538 aaKnown RBP14.23□□□□□ -0.13
SHMT2-223ENST00000556689 CATSPER4Q7RTX7 472 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 MIER3Q7Z3K6 550 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 ZNF410Q86VK4 478 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 RHPN2Q8IUC4 686 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 FEZF2Q8TBJ5 459 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 URGCPQ8TCY9 931 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 CEP89Q96ST8 783 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 KANSL3Q9P2N6 904 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 DNAJB4Q9UDY4 337 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 DUSP12Q9UNI6 340 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 PLXNA3P51805 1871 aa14.23□□□□□ -0.13
SHMT2-223ENST00000556689 MEIS3P2A8K0S8 358 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 DDX11L8A8MPP1 907 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 STK25O00506 426 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 LILRB3O75022 631 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 PSMD10O75832 226 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 STBD1O95210 358 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 CNPP09543 421 aaKnown RBP14.22□□□□□ -0.13
SHMT2-223ENST00000556689 ANGPT1Q15389 498 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 LETM2Q2VYF4 491 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 C15orf39Q6ZRI6 1047 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 ZNF280BQ86YH2 543 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 CCDC105Q8IYK2 499 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 SIX5Q8N196 739 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 DTWD2Q8NBA8 298 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 CCDC148Q8NFR7 591 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 PHKBQ93100 1093 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 GJA10Q969M2 543 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 FAM193BQ96PV7 902 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-223ENST00000556689 JPH2Q9BR39 696 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-223ENST00000556689 SH2D3AQ9BRG2 576 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 VN1R3Q9BXE9 311 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 MRPL17Q9NRX2 175 aaKnown RBP14.22□□□□□ -0.13
SHMT2-223ENST00000556689 IGSF9Q9P2J2 1179 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 FAN1Q9Y2M0 1017 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 PCDHB2Q9Y5E7 798 aa14.22□□□□□ -0.13
SHMT2-223ENST00000556689 MYH9P35579 1960 aaKnown RBP14.22□□□□□ -0.13
SHMT2-223ENST00000556689 TMEM150BA6NC51 233 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 MAFO75444 373 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-223ENST00000556689 SSBP05455 408 aaKnown RBP eCLIP14.21□□□□□ -0.13
SHMT2-223ENST00000556689 NLRP5P59047 1200 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 Q4G0T1 1027 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 AGMOQ6ZNB7 445 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 Q6ZUG5 572 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 KSR1Q8IVT5 923 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 BRF1Q92994 677 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 NLRP4Q96MN2 994 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 TMEM175Q9BSA9 504 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 VPS54Q9P1Q0 977 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 SSX2IPQ9Y2D8 614 aa14.21□□□□□ -0.13
SHMT2-223ENST00000556689 CCDC195A0A1B0GUA6 201 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 NRP1O14786 923 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 DDHD2O94830 711 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 CPA1P15085 419 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 IRX6P78412 446 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-223ENST00000556689 NONOQ15233 471 aaKnown RBP eCLIP14.2□□□□□ -0.14
SHMT2-223ENST00000556689 BMP2KLQ5H9B9 411 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 CYP26C1Q6V0L0 522 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 MRPL10Q7Z7H8 261 aaKnown RBP14.2□□□□□ -0.14
SHMT2-223ENST00000556689 TBCKQ8TEA7 893 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 SLC26A6Q9BXS9 759 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 RNF26Q9BY78 433 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-223ENST00000556689 C22orf23Q9BZE7 217 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 IFT122Q9HBG6 1241 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 WNT16Q9UBV4 365 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 DPP7Q9UHL4 492 aa14.2□□□□□ -0.14
SHMT2-223ENST00000556689 DCHS1Q96JQ0 3298 aa14.19□□□□□ -0.14
SHMT2-223ENST00000556689 CYP3A7-CYP3A51PA0A087WV96 503 aa14.19□□□□□ -0.14
SHMT2-223ENST00000556689 C2CD2LO14523 706 aa14.19□□□□□ -0.14
SHMT2-223ENST00000556689 B4GALT3O60512 393 aa14.19□□□□□ -0.14
SHMT2-223ENST00000556689 CYP3A7P24462 503 aa14.19□□□□□ -0.14
SHMT2-223ENST00000556689 AFF1P51825 1210 aaKnown RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms