RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 MLST8Q9BVC4 326 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 MTG2Q9H4K7 406 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 SYNPO2Q9UMS6 1093 aa5.58□□□□□ -1.52
SCFD1-219ENST00000556413 CBX4O00257 560 aa5.57□□□□□ -1.52
SCFD1-219ENST00000556413 MTSS1O43312 755 aa5.57□□□□□ -1.52
SCFD1-219ENST00000556413 PRPF6O94906 941 aaKnown RBP5.57□□□□□ -1.52
SCFD1-219ENST00000556413 PROZP22891 400 aa5.57□□□□□ -1.52
SCFD1-219ENST00000556413 PHYKPLQ8IUZ5 450 aa5.57□□□□□ -1.52
SCFD1-219ENST00000556413 ST8SIA2Q92186 375 aa5.57□□□□□ -1.52
SCFD1-219ENST00000556413 MYL10Q9BUA6 226 aa5.57□□□□□ -1.52
SCFD1-219ENST00000556413 OSBPL6Q9BZF3 934 aa5.57□□□□□ -1.52
SCFD1-219ENST00000556413 SPO11Q9Y5K1 396 aa5.57□□□□□ -1.52
SCFD1-219ENST00000556413 OPHN1O60890 802 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 GCP02774 474 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 JMJD7P0C870 316 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 GNAT2P19087 354 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 SDSP20132 328 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 BMP5P22003 454 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 SQSTM1Q13501 440 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 CDCA2Q69YH5 1023 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-219ENST00000556413 KIAA1841Q6NSI8 718 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 TIGD7Q6NT04 549 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-219ENST00000556413 UBE2R2Q712K3 238 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-219ENST00000556413 APBB1IPQ7Z5R6 666 aaPredicted RBP5.56□□□□□ -1.52
SCFD1-219ENST00000556413 VRK3Q8IV63 474 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 C7orf31Q8N865 590 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 GPR150Q8NGU9 434 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 UIMC1Q96RL1 719 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 POFUT1Q9H488 388 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 ING3Q9NXR8 418 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 FZD1Q9UP38 647 aa5.56□□□□□ -1.52
SCFD1-219ENST00000556413 MAFGO15525 162 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 FSBPO95073 299 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 APOL3O95236 402 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 ITGB1P05556 798 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 GAAP10253 952 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 HK1P19367 917 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 ADRA1BP35368 520 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 MAN2A1Q16706 1144 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 FAM214AQ32MH5 1076 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 DCAF17Q5H9S7 520 aaPredicted RBP5.55□□□□□ -1.52
SCFD1-219ENST00000556413 SYNE4Q8N205 404 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 RTF1Q92541 710 aaKnown RBP5.55□□□□□ -1.52
SCFD1-219ENST00000556413 NOL10Q9BSC4 688 aaKnown RBP5.55□□□□□ -1.52
SCFD1-219ENST00000556413 ENKD1Q9H0I2 346 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 OSBPL2Q9H1P3 480 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 TOMM22Q9NS69 142 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 OXSMQ9NWU1 459 aa5.55□□□□□ -1.52
SCFD1-219ENST00000556413 H2AFY2Q9P0M6 372 aaPredicted RBP5.55□□□□□ -1.52
SCFD1-219ENST00000556413 CDK11AQ9UQ88 783 aaPredicted RBP5.55□□□□□ -1.52
SCFD1-219ENST00000556413 PPP1R12AO14974 1030 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-219ENST00000556413 FLT3P36888 993 aa5.54□□□□□ -1.52
SCFD1-219ENST00000556413 DPY19L2P1Q6NXN4 242 aa5.54□□□□□ -1.52
SCFD1-219ENST00000556413 CXorf67Q86X51 503 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-219ENST00000556413 PPP1R14CQ8TAE6 165 aa5.54□□□□□ -1.52
SCFD1-219ENST00000556413 CPT1CQ8TCG5 803 aa5.54□□□□□ -1.52
SCFD1-219ENST00000556413 PROKR1Q8TCW9 393 aa5.54□□□□□ -1.52
SCFD1-219ENST00000556413 HIST1H2AHQ96KK5 128 aa5.54□□□□□ -1.52
SCFD1-219ENST00000556413 HIST1H2AJQ99878 128 aa5.54□□□□□ -1.52
SCFD1-219ENST00000556413 SORCS3Q9UPU3 1222 aa5.54□□□□□ -1.52
SCFD1-219ENST00000556413 HOXA3O43365 443 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-219ENST00000556413 CFBP00751 764 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 ATP2A2P16615 1042 aaKnown RBP5.53□□□□□ -1.52
SCFD1-219ENST00000556413 ZFP36P26651 326 aaKnown RBP5.53□□□□□ -1.52
SCFD1-219ENST00000556413 PTTG1IPP53801 180 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 CFAP100Q494V2 611 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 LY6G5CQ5SRR4 150 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 LRRC55Q6ZSA7 311 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 ZZZ3Q8IYH5 903 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 PIK3C3Q8NEB9 887 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 ZMAT4Q9H898 229 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 KANSL2Q9H9L4 492 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 HS3ST4Q9Y661 456 aa5.53□□□□□ -1.52
SCFD1-219ENST00000556413 ELL2O00472 640 aaPredicted RBP5.52□□□□□ -1.53
SCFD1-219ENST00000556413 ALDH1A2O94788 518 aa5.52□□□□□ -1.53
SCFD1-219ENST00000556413 RHOBTB3O94955 611 aa5.52□□□□□ -1.53
SCFD1-219ENST00000556413 ABHD16AO95870 558 aa5.52□□□□□ -1.53
SCFD1-219ENST00000556413 CD69Q07108 199 aa5.52□□□□□ -1.53
SCFD1-219ENST00000556413 PTPAQ15257 358 aa5.52□□□□□ -1.53
SCFD1-219ENST00000556413 KCNV1Q6PIU1 500 aa5.52□□□□□ -1.53
SCFD1-219ENST00000556413 UNC5BQ8IZJ1 945 aa5.52□□□□□ -1.53
SCFD1-219ENST00000556413 DNAJC2Q99543 621 aaKnown RBP5.52□□□□□ -1.53
SCFD1-219ENST00000556413 CPPED1Q9BRF8 314 aaPredicted RBP5.52□□□□□ -1.53
SCFD1-219ENST00000556413 ORAI3Q9BRQ5 295 aa5.52□□□□□ -1.53
SCFD1-219ENST00000556413 PACSIN3Q9UKS6 424 aa5.52□□□□□ -1.53
SCFD1-219ENST00000556413 MYPNQ86TC9 1320 aa5.51□□□□□ -1.53
SCFD1-219ENST00000556413 GRID2IPA4D2P6 1211 aa5.51□□□□□ -1.53
SCFD1-219ENST00000556413 NRP1O14786 923 aa5.51□□□□□ -1.53
SCFD1-219ENST00000556413 TRIM24O15164 1050 aa5.51□□□□□ -1.53
SCFD1-219ENST00000556413 RECQL4O94761 1208 aa5.51□□□□□ -1.53
SCFD1-219ENST00000556413 SCAF4O95104 1147 aaKnown RBP5.51□□□□□ -1.53
SCFD1-219ENST00000556413 PCDH8O95206 1070 aa5.51□□□□□ -1.53
SCFD1-219ENST00000556413 LMNAP02545 664 aaKnown RBP5.51□□□□□ -1.53
SCFD1-219ENST00000556413 CASRP41180 1078 aa5.51□□□□□ -1.53
SCFD1-219ENST00000556413 PABPC4Q13310 644 aaKnown RBP eCLIP5.51□□□□□ -1.53
SCFD1-219ENST00000556413 BMS1Q14692 1282 aaKnown RBP5.51□□□□□ -1.53
SCFD1-219ENST00000556413 SF3A1Q15459 793 aaKnown RBP5.51□□□□□ -1.53
SCFD1-219ENST00000556413 NFE2L2Q16236 605 aa5.51□□□□□ -1.53
SCFD1-219ENST00000556413 PDCD2LQ9BRP1 358 aa5.51□□□□□ -1.53
SCFD1-219ENST00000556413 CPEB1Q9BZB8 566 aaKnown RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms