RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 VTNP04004 478 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 MYBP10242 640 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 NMT1P30419 496 aaKnown RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 PRCPP42785 496 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 SOX10P56693 466 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 MRPS6P82932 125 aaKnown RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 POU5F1BQ06416 359 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 STK4Q13043 487 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 KNOP1Q1ED39 458 aaKnown RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 BMT2Q1RMZ1 405 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 MARCH8Q5T0T0 291 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 CDCA2Q69YH5 1023 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 GDF6Q6KF10 455 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 ZNF720Q7Z2F6 126 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 SRGAP1Q7Z6B7 1085 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 NELFCDQ8IXH7 590 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 DAW1Q8N136 415 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 ADSSL1Q8N142 457 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 CAGE1Q8TC20 777 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 NOC3LQ8WTT2 800 aaKnown RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 DNAJB3Q8WWF6 145 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 ANP32BQ92688 251 aaKnown RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 P2RX5Q93086 422 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 PRIMPOLQ96LW4 560 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 NTPCRQ9BSD7 190 aaKnown RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 MRPL4Q9BYD3 311 aaKnown RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 SENP6Q9GZR1 1112 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 GBP3Q9H0R5 595 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 TMEM134Q9H6X4 195 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 PRMT7Q9NVM4 692 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-220ENST00000555634 ARHGAP28Q9P2N2 729 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 GINS2Q9Y248 185 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 TRPV2Q9Y5S1 764 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 HTTP42858 3142 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 CITO14578 2027 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 GOLGA6L3A6NEY3 463 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 IKBKBO14920 756 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 PQBP1O60828 265 aaKnown RBP12.29□□□□□ -0.44
SHMT2-220ENST00000555634 PRKCBP05771 671 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 CCNE1P24864 410 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 THPOP40225 353 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 GPC3P51654 580 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 NLRP11P59045 1033 aaKnown RBP12.29□□□□□ -0.44
SHMT2-220ENST00000555634 GTF2BQ00403 316 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 SPAG1Q07617 926 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 C11orf57Q6ZUT1 292 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-220ENST00000555634 USP37Q86T82 979 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 MAP4K3Q8IVH8 894 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 CSGALNACT2Q8N6G5 542 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 AOPEPQ8N6M6 819 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 TMEM161BQ8NDZ6 487 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 HPS3Q969F9 1004 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 ADPGKQ9BRR6 497 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 FUCA2Q9BTY2 467 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 TBX20Q9UMR3 447 aa12.29□□□□□ -0.44
SHMT2-220ENST00000555634 PDXKO00764 312 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 KIAA0391O15091 583 aaKnown RBP12.28□□□□□ -0.44
SHMT2-220ENST00000555634 PRPF6O94906 941 aaKnown RBP12.28□□□□□ -0.44
SHMT2-220ENST00000555634 TPM3P06753 285 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 CRYBB1P53674 252 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-220ENST00000555634 ADAM17P78536 824 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 DRP2Q13474 957 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 PRPF4BQ13523 1007 aaKnown RBP12.28□□□□□ -0.44
SHMT2-220ENST00000555634 KIZQ2M2Z5 673 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 EDRF1Q3B7T1 1238 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 SLFN12LQ6IEE8 588 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 ARMCX5Q6P1M9 558 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 FOXR2Q6PJQ5 311 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 RUFY4Q6ZNE9 571 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 EPM2AIP1Q7L775 607 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-220ENST00000555634 KIAA0319LQ8IZA0 1049 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 LINC01465Q8N7H1 131 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 USP38Q8NB14 1042 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 ZNF507Q8TCN5 953 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 SCFD1Q8WVM8 642 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 BSNDQ8WZ55 320 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 PPP1R16BQ96T49 567 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 KIFC3Q9BVG8 833 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 FRMD4BQ9Y2L6 1034 aa12.28□□□□□ -0.44
SHMT2-220ENST00000555634 A0A087WZ62 844 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 CETN3O15182 167 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 B4GALT4O60513 344 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 PPP1R37O75864 691 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 PARNO95453 639 aaKnown RBP12.27□□□□□ -0.45
SHMT2-220ENST00000555634 GNA14O95837 355 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 CTSHP09668 335 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 EPB41P11171 864 aaKnown RBP12.27□□□□□ -0.45
SHMT2-220ENST00000555634 EIF4BP23588 611 aaKnown RBP12.27□□□□□ -0.45
SHMT2-220ENST00000555634 CASP5P51878 434 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 PTENP60484 403 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 TMEM62Q0P6H9 643 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 ZC2HC1CQ53FD0 456 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-220ENST00000555634 C1orf53Q5VUE5 145 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 SPATA1Q5VX52 437 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 ZPBP2Q6X784 338 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 FAM43BQ6ZT52 329 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-220ENST00000555634 CATSPER4Q7RTX7 472 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 RPAINQ86UA6 219 aa12.27□□□□□ -0.45
SHMT2-220ENST00000555634 IFNLR1Q8IU57 520 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-220ENST00000555634 KSR1Q8IVT5 923 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms