RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-204	ENST00000554660	SARM1	Q6SZW1	724 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	FOXD4L3	Q6VB84	417 aa	Predicted RBP	12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	TMTC2	Q8N394	836 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	FEZF2	Q8TBJ5	459 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	CASP10	Q92851	521 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	BRF1	Q92994	677 aa		12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	LARP6	Q9BRS8	491 aa	Known RBP	12.8	□□□□□ -0.36
VPS33B-204	ENST00000554660	UQCRHL	A0A096LP55	91 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	PRR23A	A6NEV1	266 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	C2orf71	A6NGG8	1288 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	PROB1	E7EW31	1015 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	DHX15	O43143	795 aa	Known RBP	12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	HOXA2	O43364	376 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	FOS	P01100	380 aa	Predicted RBP	12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	UQCRH	P07919	91 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	CLK2	P49760	499 aa	Known RBP	12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	METAP2	P50579	478 aa	Known RBP eCLIP	12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	KRT17	Q04695	432 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	AP3B2	Q13367	1082 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	SMC1A	Q14683	1233 aa	Known RBP	12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	RARS2	Q5T160	578 aa	Known RBP	12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	CES5A	Q6NT32	575 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	KANK3	Q6NY19	840 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	PLA2G4D	Q86XP0	818 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	ECHDC2	Q86YB7	292 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	UBALD2	Q8IYN6	164 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	SLC39A11	Q8N1S5	342 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	LRRC71	Q8N4P6	559 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	C12orf76	Q8N812	135 aa	Predicted RBP	12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	NSUN7	Q8NE18	718 aa	Known RBP	12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	KIAA1524	Q8TCG1	905 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	ADAM7	Q9H2U9	754 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	DACT1	Q9NYF0	836 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	SPG21	Q9NZD8	308 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	AKT3	Q9Y243	479 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	EVPL	Q92817	2033 aa		12.79	□□□□□ -0.36
VPS33B-204	ENST00000554660	DCHS1	Q96JQ0	3298 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	IGLV3-22	A0A075B6J6	115 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	SMCO2	A6NFE2	343 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	NT5C1B-RDH14	C9J2C7	533 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	IPO5	O00410	1097 aa	Known RBP	12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	NEMF	O60524	1076 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	CLASP2	O75122	1294 aa	Known RBP	12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	LIG1	P18858	919 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	FGFR4	P22455	802 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	NUBP1	P53384	320 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	NLRP11	P59045	1033 aa	Known RBP	12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	FUT2	Q10981	343 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	SCRN1	Q12765	414 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	JAKMIP3	Q5VZ66	844 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	APOA5	Q6Q788	366 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	NIPA1	Q7RTP0	329 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	SGMS1	Q86VZ5	419 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	MRPL43	Q8N983	215 aa	Known RBP	12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	TDRD5	Q8NAT2	981 aa	Known RBP	12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	HELQ	Q8TDG4	1101 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	AUTS2	Q8WXX7	1259 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	BBX	Q8WY36	941 aa	Predicted RBP	12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	TCEANC2	Q96MN5	208 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	NECTIN4	Q96NY8	510 aa		12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	MAFB	Q9Y5Q3	323 aa	Predicted RBP	12.78	□□□□□ -0.36
VPS33B-204	ENST00000554660	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660		A0A1W2PQ27	194 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660		A0A1W2PQ64	194 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660		A0A1W2PQD8	194 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	ADAMTS3	O15072	1205 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	ZSCAN20	P17040	1043 aa	Predicted RBP	12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	NBL1	P41271	181 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	ITIH3	Q06033	890 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	RTN1	Q16799	776 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	CWF19L1	Q69YN2	538 aa	Known RBP	12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	FAM43B	Q6ZT52	329 aa	Predicted RBP	12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	FRMD5	Q7Z6J6	570 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	TMEM173	Q86WV6	379 aa	Predicted RBP	12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	ZNF577	Q9BSK1	485 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	ADAMTS10	Q9H324	1103 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	MFSD1	Q9H3U5	465 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	RBM28	Q9NW13	759 aa	Known RBP	12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	BARHL2	Q9NY43	387 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	GABBR1	Q9UBS5	961 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	TCEAL9	Q9UHQ7	104 aa		12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660		V9GY48	417 aa	Predicted RBP	12.77	□□□□□ -0.37
VPS33B-204	ENST00000554660	DENND4A	Q7Z401	1863 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	EPCAM	P16422	314 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	ADD1	P35611	737 aa	Known RBP	12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	MTHFR	P42898	656 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	BCAR1	P56945	870 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	FGD1	P98174	961 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	ASTL	Q6HA08	431 aa	Predicted RBP	12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	KIAA1841	Q6NSI8	718 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	ZNF746	Q6NUN9	644 aa	Predicted RBP	12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	EFCAB12	Q6NXP0	572 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	SYNE3	Q6ZMZ3	975 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	FERMT3	Q86UX7	667 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	LINC01465	Q8N7H1	131 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	FLCN	Q8NFG4	579 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	BICD2	Q8TD16	824 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	CRYGN	Q8WXF5	182 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	SCLT1	Q96NL6	688 aa		12.76	□□□□□ -0.37
VPS33B-204	ENST00000554660	ZBP1	Q9H171	429 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 53 ms