RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 TRIM67Q6ZTA4 783 aa11.85□□□□□ -0.51
SHMT2-215ENST00000554656 KRT25Q7Z3Z0 450 aa11.85□□□□□ -0.51
SHMT2-215ENST00000554656 ALYREFQ86V81 257 aaKnown RBP11.85□□□□□ -0.51
SHMT2-215ENST00000554656 RHPN2Q8IUC4 686 aa11.85□□□□□ -0.51
SHMT2-215ENST00000554656 FAM177A1Q8N128 213 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-215ENST00000554656 OXER1Q8TDS5 423 aa11.85□□□□□ -0.51
SHMT2-215ENST00000554656 TRAIPQ9BWF2 469 aa11.85□□□□□ -0.51
SHMT2-215ENST00000554656 GCOM2Q9BZD3 368 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-215ENST00000554656 IFT122Q9HBG6 1241 aa11.85□□□□□ -0.51
SHMT2-215ENST00000554656 NGRNQ9NPE2 291 aaKnown RBP11.85□□□□□ -0.51
SHMT2-215ENST00000554656 SUCLA2Q9P2R7 463 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-215ENST00000554656 PLXNA3P51805 1871 aa11.85□□□□□ -0.51
SHMT2-215ENST00000554656 FSD2A1L4K1 749 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 CLASP2O75122 1294 aaKnown RBP11.84□□□□□ -0.51
SHMT2-215ENST00000554656 CTDNEP1O95476 244 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 SP100P23497 879 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-215ENST00000554656 PSMC5P62195 406 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 TWF2Q6IBS0 349 aaKnown RBP11.84□□□□□ -0.51
SHMT2-215ENST00000554656 GALNT17Q6IS24 598 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 TMC7Q7Z402 723 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 BMP8AQ7Z5Y6 402 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 ZNF410Q86VK4 478 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 MRPL43Q8N983 215 aaKnown RBP11.84□□□□□ -0.51
SHMT2-215ENST00000554656 PRSS33Q8NF86 280 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 AUTS2Q8WXX7 1259 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 HAS1Q92839 578 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 NLRP4Q96MN2 994 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 VN1R3Q9BXE9 311 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 ZBP1Q9H171 429 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 NRDE2Q9H7Z3 1164 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 MINDY3Q9H8M7 445 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 CYP26B1Q9NR63 512 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 TBC1D13Q9NVG8 400 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 DACT1Q9NYF0 836 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 PUF60Q9UHX1 559 aaKnown RBP11.84□□□□□ -0.51
SHMT2-215ENST00000554656 TPCN1Q9ULQ1 816 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 PIN4Q9Y237 131 aaKnown RBP11.84□□□□□ -0.51
SHMT2-215ENST00000554656 HCFC2Q9Y5Z7 792 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 TDRD15B5MCY1 1934 aaKnown RBP11.84□□□□□ -0.51
SHMT2-215ENST00000554656 STK36Q9NRP7 1315 aa11.84□□□□□ -0.51
SHMT2-215ENST00000554656 CACNA1HO95180 2353 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 ZC3H11AO75152 810 aaKnown RBP eCLIP11.83□□□□□ -0.52
SHMT2-215ENST00000554656 SFPQP23246 707 aaKnown RBP eCLIP11.83□□□□□ -0.52
SHMT2-215ENST00000554656 AFF1P51825 1210 aaKnown RBP11.83□□□□□ -0.52
SHMT2-215ENST00000554656 KRT17Q04695 432 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 SPIRE1Q08AE8 756 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 SMC1AQ14683 1233 aaKnown RBP11.83□□□□□ -0.52
SHMT2-215ENST00000554656 IER5LQ5T953 404 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 KANK3Q6NY19 840 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 AGMOQ6ZNB7 445 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 NEK8Q86SG6 692 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 POTEDQ86YR6 584 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 ASIC4Q96FT7 647 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 PHOX2BQ99453 314 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 MRPL9Q9BYD2 267 aaKnown RBP11.83□□□□□ -0.52
SHMT2-215ENST00000554656 KCNH6Q9H252 994 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 POMKQ9H5K3 350 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 DHX33Q9H6R0 707 aaKnown RBP11.83□□□□□ -0.52
SHMT2-215ENST00000554656 CHST12Q9NRB3 414 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 BMP2KQ9NSY1 1161 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-215ENST00000554656 AGPAT5Q9NUQ2 364 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 FAM105AQ9NUU6 356 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 DNAJB4Q9UDY4 337 aa11.83□□□□□ -0.52
SHMT2-215ENST00000554656 CCDC194A0A1B0GVG4 234 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 ZBTB39O15060 712 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 PFKFB2O60825 505 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 ZNF623O75123 536 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 OFD1O75665 1012 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 LARGE1O95461 756 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 GALTP07902 379 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 WEE2P0C1S8 567 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 HOXB8P17481 243 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-215ENST00000554656 QARSP47897 775 aaKnown RBP11.82□□□□□ -0.52
SHMT2-215ENST00000554656 SLC11A1P49279 550 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 MRE11P49959 708 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 DNM2P50570 870 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 ME3Q16798 604 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 PTPN21Q16825 1174 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 NOMO2Q5JPE7 1267 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 UBXN11Q5T124 520 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 PPP4R3AQ6IN85 833 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 CPLX2Q6PUV4 134 aaKnown RBP11.82□□□□□ -0.52
SHMT2-215ENST00000554656 PIK3AP1Q6ZUJ8 805 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 CATSPER4Q7RTX7 472 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 ZNF280BQ86YH2 543 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 VPS52Q8N1B4 723 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 C12orf76Q8N812 135 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-215ENST00000554656 SPRYD3Q8NCJ5 442 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 CASP10Q92851 521 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 TNFRSF25Q93038 417 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 TMEM143Q96AN5 459 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 IGSF21Q96ID5 467 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 MFSD14AQ96MC6 490 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 FAM20AQ96MK3 541 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 LXNQ9BS40 222 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 RGL1Q9NZL6 768 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 INPP5FQ9Y2H2 1132 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 COL4A3BPQ9Y5P4 624 aa11.82□□□□□ -0.52
SHMT2-215ENST00000554656 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-215ENST00000554656 WNT7AO00755 349 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms