RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 VEZTQ9HBM0 779 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.95■□□□□ 0.62
SYNE3-202ENST00000553340 VAV3Q9UKW4 847 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 SLC12A4Q9UP95 1085 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 FRMD4BQ9Y2L6 1034 aa18.95■□□□□ 0.62
SYNE3-202ENST00000553340 C6orf229H3BNL8 230 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 IBSPP21815 317 aaPredicted RBP18.94■□□□□ 0.62
SYNE3-202ENST00000553340 HADHBP55084 474 aaKnown RBP18.94■□□□□ 0.62
SYNE3-202ENST00000553340 E2F5Q15329 346 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 ARHGAP44Q17R89 818 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 BTNL9Q6UXG8 535 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 HS2ST1Q7LGA3 356 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 PRMT1Q99873 361 aaKnown RBP18.94■□□□□ 0.62
SYNE3-202ENST00000553340 TMEM109Q9BVC6 243 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 AMNQ9BXJ7 453 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 PCYOX1Q9UHG3 505 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 ATP6V1G2O95670 118 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 VIMP08670 466 aaKnown RBP18.94■□□□□ 0.62
SYNE3-202ENST00000553340 RPL21P46778 160 aaKnown RBP18.94■□□□□ 0.62
SYNE3-202ENST00000553340 ZC2HC1CQ53FD0 456 aaPredicted RBP18.94■□□□□ 0.62
SYNE3-202ENST00000553340 SLFN13Q68D06 897 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 CCDC63Q8NA47 563 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 ELAC2Q9BQ52 826 aaKnown RBP18.94■□□□□ 0.62
SYNE3-202ENST00000553340 DONSONQ9NYP3 566 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 RGL1Q9NZL6 768 aa18.94■□□□□ 0.62
SYNE3-202ENST00000553340 FAM170AA1A519 330 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 KIF22Q14807 665 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 SLMAPQ14BN4 828 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 PPP2R5AQ15172 486 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 TRAPPC3LQ5T215 181 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 PRR5LQ6MZQ0 368 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 C11orf63Q6NUN7 778 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 PALB2Q86YC2 1186 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 PRELID2Q8N945 189 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 CTTNBP2NLQ9P2B4 639 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 AHDC1Q5TGY3 1603 aaPredicted RBP18.93■□□□□ 0.62
SYNE3-202ENST00000553340 KIF1CO43896 1103 aaKnown RBP18.93■□□□□ 0.62
SYNE3-202ENST00000553340 CIITAP33076 1130 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 MYL7Q01449 175 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 FAM98CQ17RN3 349 aaKnown RBP18.93■□□□□ 0.62
SYNE3-202ENST00000553340 CHADLQ6NUI6 762 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 AADACL2Q6P093 401 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 TRPM8Q7Z2W7 1104 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 PIGOQ8TEQ8 1089 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 RBM17Q96I25 401 aaKnown RBP18.93■□□□□ 0.62
SYNE3-202ENST00000553340 AGPAT1Q99943 283 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 TAOK3Q9H2K8 898 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 PARVGQ9HBI0 331 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 NOD2Q9HC29 1040 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 SUGT1Q9Y2Z0 365 aa18.93■□□□□ 0.62
SYNE3-202ENST00000553340 PFASO15067 1338 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 GGPS1O95749 300 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 TRIM49P0CI25 452 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 TRIM49CP0CI26 452 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 RFX1P22670 979 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 CTNNA2P26232 953 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 CTTNQ14247 550 aaKnown RBP18.92■□□□□ 0.62
SYNE3-202ENST00000553340 COG2Q14746 738 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 CRY2Q49AN0 593 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 STXBP4Q6ZWJ1 553 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 TAOK1Q7L7X3 1001 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 ATP6V0A4Q9HBG4 840 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 BAIAP2L1Q9UHR4 511 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 GREB1LQ9C091 1923 aaPredicted RBP18.92■□□□□ 0.62
SYNE3-202ENST00000553340 EML1O00423 815 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 RASGRF2O14827 1237 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 EEF2P13639 858 aaKnown RBP18.92■□□□□ 0.62
SYNE3-202ENST00000553340 POLD1P28340 1107 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 ZNF76P36508 570 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 CYP2J2P51589 502 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 CCDC137Q6PK04 289 aaKnown RBP18.92■□□□□ 0.62
SYNE3-202ENST00000553340 CERKQ8TCT0 537 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 EPS8L3Q8TE67 593 aaKnown RBP18.92■□□□□ 0.62
SYNE3-202ENST00000553340 MKL1Q969V6 931 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 ZSWIM1Q9BR11 485 aa18.92■□□□□ 0.62
SYNE3-202ENST00000553340 CFAP73A6NFT4 308 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 FOXN3O00409 490 aaPredicted RBP18.91■□□□□ 0.62
SYNE3-202ENST00000553340 RIPK2O43353 540 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 LRRN2O75325 713 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 BBOX1O75936 387 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 RARGP13631 454 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 SEL1L2Q5TEA6 688 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 C1orf186Q6ZWK4 172 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 UHMK1Q8TAS1 419 aaKnown RBP18.91■□□□□ 0.62
SYNE3-202ENST00000553340 KRT35Q92764 455 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 UBE4BO95155 1302 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 BCRP11274 1271 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 FGFR4P22455 802 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 SLCO1A2P46721 670 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 SF3A3Q12874 501 aaKnown RBP eCLIP18.91■□□□□ 0.626e-9■■■■■ 59.3
SYNE3-202ENST00000553340 USH1GQ495M9 461 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 PHLDB3Q6NSJ2 640 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 TTC27Q6P3X3 843 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 FBXO11Q86XK2 927 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 KSR1Q8IVT5 923 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 RUNDC3BQ96NL0 473 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 CCDC113Q9H0I3 377 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 AGPAT3Q9NRZ7 376 aa18.91■□□□□ 0.62
SYNE3-202ENST00000553340 FTLP02792 175 aaPredicted RBP18.9■□□□□ 0.62
SYNE3-202ENST00000553340 IFNAR2P48551 515 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms