RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 FGF14Q92915 247 aa16.41■□□□□ 0.22
VPS29-209ENST00000551655 SPZ1Q9BXG8 430 aa16.41■□□□□ 0.22
VPS29-209ENST00000551655 ZBTB47Q9UFB7 747 aaPredicted RBP16.41■□□□□ 0.22
VPS29-209ENST00000551655 SEC63Q9UGP8 760 aaKnown RBP16.41■□□□□ 0.22
VPS29-209ENST00000551655 PKD1L2Q7Z442 2459 aa16.4■□□□□ 0.22
VPS29-209ENST00000551655 FASNP49327 2511 aaKnown RBP16.4■□□□□ 0.22
VPS29-209ENST00000551655 SLC30A4O14863 429 aa16.4■□□□□ 0.22
VPS29-209ENST00000551655 RNASELQ05823 741 aaKnown RBP16.4■□□□□ 0.22
VPS29-209ENST00000551655 EFCAB12Q6NXP0 572 aa16.4■□□□□ 0.22
VPS29-209ENST00000551655 TAS1R1Q7RTX1 841 aa16.4■□□□□ 0.22
VPS29-209ENST00000551655 TICAM2Q86XR7 235 aa16.4■□□□□ 0.22
VPS29-209ENST00000551655 LINC01465Q8N7H1 131 aa16.4■□□□□ 0.22
VPS29-209ENST00000551655 NXPE3Q969Y0 559 aa16.4■□□□□ 0.22
VPS29-209ENST00000551655 DIAPH3Q9NSV4 1193 aa16.4■□□□□ 0.22
VPS29-209ENST00000551655 GMEB2Q9UKD1 530 aa16.4■□□□□ 0.22
VPS29-209ENST00000551655 MYH9P35579 1960 aaKnown RBP16.4■□□□□ 0.22
VPS29-209ENST00000551655 FAM170BA6NMN3 283 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 TEX28O15482 410 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 GDF9O60383 454 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 DDHD2O94830 711 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 DARSP14868 501 aaKnown RBP16.39■□□□□ 0.21
VPS29-209ENST00000551655 KIF5BP33176 963 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 PHKA2P46019 1235 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 AFF1P51825 1210 aaKnown RBP16.39■□□□□ 0.21
VPS29-209ENST00000551655 AK2P54819 239 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 DMWDQ09019 674 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 MLF2Q15773 248 aaPredicted RBP16.39■□□□□ 0.21
VPS29-209ENST00000551655 NOMO2Q5JPE7 1267 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 PARM1Q6UWI2 310 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 CATIPQ7Z7H3 387 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 SRBD1Q8N5C6 995 aaKnown RBP16.39■□□□□ 0.21
VPS29-209ENST00000551655 NELL1Q92832 810 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 SCLT1Q96NL6 688 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 DDX23Q9BUQ8 820 aaKnown RBP16.39■□□□□ 0.21
VPS29-209ENST00000551655 MRPL17Q9NRX2 175 aaKnown RBP16.39■□□□□ 0.21
VPS29-209ENST00000551655 ANGPTL2Q9UKU9 493 aa16.39■□□□□ 0.21
VPS29-209ENST00000551655 ERICH2A1L162 156 aa16.38■□□□□ 0.21
VPS29-209ENST00000551655 GPC3P51654 580 aa16.38■□□□□ 0.21
VPS29-209ENST00000551655 NETO1Q8TDF5 533 aa16.38■□□□□ 0.21
VPS29-209ENST00000551655 SHDQ96IW2 340 aa16.38■□□□□ 0.21
VPS29-209ENST00000551655 MAP7D2Q96T17 732 aa16.38■□□□□ 0.21
VPS29-209ENST00000551655 PIDD1Q9HB75 910 aa16.38■□□□□ 0.21
VPS29-209ENST00000551655 LTB4R2Q9NPC1 389 aa16.38■□□□□ 0.21
VPS29-209ENST00000551655 WDR81Q562E7 1941 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 TBC1D4O60343 1298 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 OFD1O75665 1012 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 GLUD1P00367 558 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 RXRAP19793 462 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 ANTXR2P58335 489 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 CEP55Q53EZ4 464 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 MIS18BP1Q6P0N0 1132 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 GLB1LQ6UWU2 654 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 RAB11FIP4Q86YS3 637 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 LNPKQ9C0E8 428 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 DACT1Q9NYF0 836 aa16.37■□□□□ 0.21
VPS29-209ENST00000551655 MEIS1O00470 390 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 DHX15O43143 795 aaKnown RBP16.36■□□□□ 0.21
VPS29-209ENST00000551655 URODP06132 367 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 TARSP26639 723 aaKnown RBP16.36■□□□□ 0.21
VPS29-209ENST00000551655 TRDNQ13061 729 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 DRP2Q13474 957 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 SLC44A4Q53GD3 710 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 TWF2Q6IBS0 349 aaKnown RBP16.36■□□□□ 0.21
VPS29-209ENST00000551655 PALB2Q86YC2 1186 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 GLYCTKQ8IVS8 523 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 ZNF654Q8IZM8 581 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 CCDC82Q8N4S0 544 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 CTCFLQ8NI51 663 aaPredicted RBP16.36■□□□□ 0.21
VPS29-209ENST00000551655 NLRP7Q8WX94 980 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 RPS6KC1Q96S38 1066 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 NT5C3AQ9H0P0 336 aa16.36■□□□□ 0.21
VPS29-209ENST00000551655 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.36■□□□□ 0.21
VPS29-209ENST00000551655 MAFBQ9Y5Q3 323 aaPredicted RBP16.36■□□□□ 0.21
VPS29-209ENST00000551655 MTCL1Q9Y4B5 1905 aaKnown RBP16.36■□□□□ 0.21
VPS29-209ENST00000551655 CNOT1A5YKK6 2376 aaKnown RBP16.35■□□□□ 0.21
VPS29-209ENST00000551655 F8W810 466 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 ADH1AP07327 375 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 CYP21A2P08686 494 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 PMLP29590 882 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 NTHL1P78549 312 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 N4BP2L1Q5TBK1 243 aaPredicted RBP16.35■□□□□ 0.21
VPS29-209ENST00000551655 HEATR3Q7Z4Q2 680 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 IGDCC4Q8TDY8 1250 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 BORCS6Q96GS4 357 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 B3GALT6Q96L58 329 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 HERC2P3Q9BVR0 1158 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 RHOBTB2Q9BYZ6 727 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 LY9Q9HBG7 655 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 PRMT8Q9NR22 394 aaPredicted RBP16.35■□□□□ 0.21
VPS29-209ENST00000551655 MARCH5Q9NX47 278 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 GABBR1Q9UBS5 961 aa16.35■□□□□ 0.21
VPS29-209ENST00000551655 PRG3Q9Y2Y8 225 aaPredicted RBP16.35■□□□□ 0.21
VPS29-209ENST00000551655 NRP1O14786 923 aa16.34■□□□□ 0.21
VPS29-209ENST00000551655 SOD2P04179 222 aa16.34■□□□□ 0.21
VPS29-209ENST00000551655 MTAPQ13126 283 aa16.34■□□□□ 0.21
VPS29-209ENST00000551655 TYW1BQ6NUM6 668 aa16.34■□□□□ 0.21
VPS29-209ENST00000551655 CYP26C1Q6V0L0 522 aa16.34■□□□□ 0.21
VPS29-209ENST00000551655 PHKBQ93100 1093 aa16.34■□□□□ 0.21
VPS29-209ENST00000551655 ANO3Q9BYT9 981 aa16.34■□□□□ 0.21
VPS29-209ENST00000551655 SEMA4GQ9NTN9 838 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms