RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PI15O43692 258 aa11.94□□□□□ -0.5
VPS29-208ENST00000550267 CCNE2O96020 404 aa11.94□□□□□ -0.5
VPS29-208ENST00000550267 VTNP04004 478 aa11.94□□□□□ -0.5
VPS29-208ENST00000550267 SLC26A2P50443 739 aa11.94□□□□□ -0.5
VPS29-208ENST00000550267 MB21D2Q8IYB1 491 aaPredicted RBP11.94□□□□□ -0.5
VPS29-208ENST00000550267 SLC39A11Q8N1S5 342 aa11.94□□□□□ -0.5
VPS29-208ENST00000550267 FEZF2Q8TBJ5 459 aa11.94□□□□□ -0.5
VPS29-208ENST00000550267 AGO4Q9HCK5 861 aaKnown RBP11.94□□□□□ -0.5
VPS29-208ENST00000550267 COL1A2P08123 1366 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 ZBTB42B2RXF5 422 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 NT5C1B-RDH14C9J2C7 533 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 GPR32O75388 356 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 C22orf31O95567 290 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 IGHDP01880 384 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 ATP4AP20648 1035 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 GNAQP50148 359 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 ZNF484Q5JVG2 852 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 FAM160B1Q5W0V3 765 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 KIAA1841Q6NSI8 718 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 ABHD15Q6UXT9 468 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 HEATR3Q7Z4Q2 680 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 RAB11FIP4Q86YS3 637 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 CCDC60Q8IWA6 550 aaPredicted RBP11.93□□□□□ -0.5
VPS29-208ENST00000550267 ABI1Q8IZP0 508 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 CCDC82Q8N4S0 544 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 RNF169Q8NCN4 708 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 EHBP1Q8NDI1 1231 aa11.93□□□□□ -0.5
VPS29-208ENST00000550267 RWDD1Q9H446 243 aaPredicted RBP11.93□□□□□ -0.5
VPS29-208ENST00000550267 DBR1Q9UK59 544 aaKnown RBP11.93□□□□□ -0.5
VPS29-208ENST00000550267 CXCL14O95715 111 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 EOMESO95936 686 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 EPCAMP16422 314 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 NPR3P17342 541 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 AOC1P19801 751 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 METAP2P50579 478 aaKnown RBP eCLIP11.92□□□□□ -0.5
VPS29-208ENST00000550267 ANGPT1Q15389 498 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 CEP55Q53EZ4 464 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 CLLU1OSQ5K130 101 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 ATAT1Q5SQI0 421 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 PDXDC2PQ6P474 469 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 NFXL1Q6ZNB6 911 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 ECHDC2Q86YB7 292 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 CCDC105Q8IYK2 499 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 AUTS2Q8WXX7 1259 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 ZNF302Q9NR11 478 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 USTQ9Y2C2 406 aa11.92□□□□□ -0.5
VPS29-208ENST00000550267 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.91□□□□□ -0.5
VPS29-208ENST00000550267 MED19A0JLT2 244 aaPredicted RBP11.91□□□□□ -0.5
VPS29-208ENST00000550267 CCDC69A6NI79 296 aa11.91□□□□□ -0.5
VPS29-208ENST00000550267 PRC1O43663 620 aa11.91□□□□□ -0.5
VPS29-208ENST00000550267 GSPT1P15170 499 aaKnown RBP11.91□□□□□ -0.5
VPS29-208ENST00000550267 ZSCAN20P17040 1043 aaPredicted RBP11.91□□□□□ -0.5
VPS29-208ENST00000550267 CLCN3P51790 818 aa11.91□□□□□ -0.5
VPS29-208ENST00000550267 SWSAP1Q6NVH7 229 aa11.91□□□□□ -0.5
VPS29-208ENST00000550267 CASC1Q6TDU7 716 aa11.91□□□□□ -0.5
VPS29-208ENST00000550267 TRMT1LQ7Z2T5 733 aaKnown RBP11.91□□□□□ -0.5
VPS29-208ENST00000550267 METTL13Q8N6R0 699 aa11.91□□□□□ -0.5
VPS29-208ENST00000550267 KRI1Q8N9T8 703 aaKnown RBP11.91□□□□□ -0.5
VPS29-208ENST00000550267 HELQQ8TDG4 1101 aa11.91□□□□□ -0.5
VPS29-208ENST00000550267 ZNF668Q96K58 619 aaPredicted RBP11.91□□□□□ -0.5
VPS29-208ENST00000550267 CYP26B1Q9NR63 512 aa11.91□□□□□ -0.5
VPS29-208ENST00000550267 DZANK1Q9NVP4 752 aa11.91□□□□□ -0.5
VPS29-208ENST00000550267 MEIS1O00470 390 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 SH2B2O14492 632 aaPredicted RBP11.9□□□□□ -0.5
VPS29-208ENST00000550267 BCAR1P56945 870 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 NLRP11P59045 1033 aaKnown RBP11.9□□□□□ -0.5
VPS29-208ENST00000550267 COL9A3Q14050 684 aaPredicted RBP11.9□□□□□ -0.5
VPS29-208ENST00000550267 WWC2Q6AWC2 1192 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 MIS18BP1Q6P0N0 1132 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 TMC5Q6UXY8 1006 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 TMEM173Q86WV6 379 aaPredicted RBP11.9□□□□□ -0.5
VPS29-208ENST00000550267 CKAP2LQ8IYA6 745 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 VPS52Q8N1B4 723 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 DTWD2Q8NBA8 298 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 TMEM87AQ8NBN3 555 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 SLC22A17Q8WUG5 538 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 RUFY2Q8WXA3 655 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 RMDN1Q96DB5 314 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 TMEM169Q96HH4 297 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 ANO3Q9BYT9 981 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 ZBP1Q9H171 429 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 PCDHGC3Q9UN70 934 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 DCHS1Q96JQ0 3298 aa11.9□□□□□ -0.5
VPS29-208ENST00000550267 CACNA1HO95180 2353 aa11.9□□□□□ -0.51
VPS29-208ENST00000550267 DHX15O43143 795 aaKnown RBP11.89□□□□□ -0.51
VPS29-208ENST00000550267 CCNYL3P0C7X3 344 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 CALM1P0DP23 149 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 CALM2P0DP24 149 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 CALM3P0DP25 149 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 FGFR4P22455 802 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 CHMLP26374 656 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 ZNF76P36508 570 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 ALDH7A1P49419 539 aaKnown RBP11.89□□□□□ -0.51
VPS29-208ENST00000550267 SH3BP2P78314 561 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 TDGQ13569 410 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 BMS1Q14692 1282 aaKnown RBP11.89□□□□□ -0.51
VPS29-208ENST00000550267 TMTC3Q6ZXV5 915 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 SIX5Q8N196 739 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 LRRC71Q8N4P6 559 aa11.89□□□□□ -0.51
VPS29-208ENST00000550267 KCNG4Q8TDN1 519 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms