RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 GAP43P17677 238 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 ABCD1P33897 745 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 AFMP43652 599 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 NPTX2P47972 431 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 KCNJ6P48051 423 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 UBE2HP62256 183 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 FAM228AQ86W67 206 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 CCDC65Q8IXS2 484 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 DAW1Q8N136 415 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 SLC17A8Q8NDX2 589 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 SPIRE2Q8WWL2 714 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 C7orf25Q9BPX7 421 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 PCDH10Q9P2E7 1040 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 TANC1Q9C0D5 1861 aa15.2■□□□□ 0.02
PTCH1-213ENST00000546820 SCN5AQ14524 2016 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 A0A1W2PPC1 479 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 DENND3A2RUS2 1198 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 CSDE1O75534 798 aaKnown RBP15.19■□□□□ 0.02
PTCH1-213ENST00000546820 MYL1P05976 194 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 AXLP30530 894 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 CACNB1Q02641 598 aaPredicted RBP15.19■□□□□ 0.02
PTCH1-213ENST00000546820 FAM160A1Q05DH4 1040 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 MAPK7Q13164 816 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 SHHQ15465 462 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 MAPK6Q16659 721 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 CNNM4Q6P4Q7 775 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 TDHQ8IZJ6 230 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 STAMQ92783 540 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 VWCEQ96DN2 955 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 RNPC3Q96LT9 517 aaKnown RBP15.19■□□□□ 0.02
PTCH1-213ENST00000546820 OSBPL7Q9BZF2 842 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 TRIM9Q9C026 710 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 GOLPH3LQ9H4A5 285 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 PANK4Q9NVE7 773 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 PRMT7Q9NVM4 692 aaPredicted RBP15.19■□□□□ 0.02
PTCH1-213ENST00000546820 DACT1Q9NYF0 836 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 SEL1LQ9UBV2 794 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 HOOK1Q9UJC3 728 aaKnown RBP15.19■□□□□ 0.02
PTCH1-213ENST00000546820 SLC4A7Q9Y6M7 1214 aa15.19■□□□□ 0.02
PTCH1-213ENST00000546820 CEP290O15078 2479 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 ENPP3O14638 875 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 ACTN4O43707 911 aaKnown RBP15.18■□□□□ 0.02
PTCH1-213ENST00000546820 TRAK2O60296 914 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 AMHP03971 560 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 ZNF131P52739 623 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 ASIC1P78348 528 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 HERC4Q5GLZ8 1057 aaPredicted RBP15.18■□□□□ 0.02
PTCH1-213ENST00000546820 CDCA2Q69YH5 1023 aaPredicted RBP15.18■□□□□ 0.02
PTCH1-213ENST00000546820 KRBA2Q6ZNG9 492 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 FAM178BQ8IXR5 827 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 FMR1NBQ8N0W7 255 aaPredicted RBP15.18■□□□□ 0.02
PTCH1-213ENST00000546820 BSNDQ8WZ55 320 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 DNAJC19Q96DA6 116 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 PAGE5Q96GU1 130 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 PRIMPOLQ96LW4 560 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 TMEM134Q9H6X4 195 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 C1orf112Q9NSG2 853 aa15.18■□□□□ 0.02
PTCH1-213ENST00000546820 ACKR2O00590 384 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 SLC16A4O15374 487 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 GADD45BO75293 160 aaPredicted RBP15.17■□□□□ 0.02
PTCH1-213ENST00000546820 MAPTP10636 758 aaKnown RBP15.17■□□□□ 0.02
PTCH1-213ENST00000546820 SKIP12755 728 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 FGFR4P22455 802 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 MBTD1Q05BQ5 628 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 STRN3Q13033 797 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 FAM187BQ17R55 369 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 TMEM132AQ24JP5 1023 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 C9orf50Q5SZB4 431 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 SLC24A5Q71RS6 500 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 ENGASEQ8NFI3 743 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 PHOSPHO2Q8TCD6 241 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 CCDC47Q96A33 483 aaKnown RBP15.17■□□□□ 0.02
PTCH1-213ENST00000546820 TIGD1Q96MW7 591 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 ADAM2Q99965 735 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 FZD8Q9H461 694 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 MINDY3Q9H8M7 445 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 RGS18Q9NS28 235 aa15.17■□□□□ 0.02
PTCH1-213ENST00000546820 COLQQ9Y215 455 aaPredicted RBP15.17■□□□□ 0.02
PTCH1-213ENST00000546820 TET1Q8NFU7 2136 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.16■□□□□ 0.02
PTCH1-213ENST00000546820 PVALEFA0A1B0GWK0 134 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 GTPBP6O43824 516 aaPredicted RBP15.16■□□□□ 0.02
PTCH1-213ENST00000546820 KINO60870 393 aaKnown RBP15.16■□□□□ 0.02
PTCH1-213ENST00000546820 PRKCBP05771 671 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 LIG1P18858 919 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 NCKAP1LP55160 1127 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 PRPF4BQ13523 1007 aaKnown RBP15.16■□□□□ 0.02
PTCH1-213ENST00000546820 SNW1Q13573 536 aaKnown RBP15.16■□□□□ 0.02
PTCH1-213ENST00000546820 RASIP1Q5U651 963 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 NOTUMQ6P988 496 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 PPP4R3CPQ6ZMV5 832 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 HAUS6Q7Z4H7 955 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 APBB1IPQ7Z5R6 666 aaPredicted RBP15.16■□□□□ 0.02
PTCH1-213ENST00000546820 SLC9A7Q96T83 725 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 TSPYL2Q9H2G4 693 aaPredicted RBP15.16■□□□□ 0.02
PTCH1-213ENST00000546820 PRO3102Q9H379 93 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 TMX1Q9H3N1 280 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 MRPL44Q9H9J2 332 aaKnown RBP15.16■□□□□ 0.02
PTCH1-213ENST00000546820 AGPAT5Q9NUQ2 364 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 ARHGAP28Q9P2N2 729 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms