RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CTDP1Q9Y5B0 961 aaPredicted RBP9.41□□□□□ -0.9
VPS29-203ENST00000546588 FRMD3A2A2Y4 597 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 PP2D1A8MPX8 630 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 IPO5O00410 1097 aaKnown RBP9.4□□□□□ -0.9
VPS29-203ENST00000546588 STRNO43815 780 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 F11P03951 625 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 SPATA31C1P0DKV0 1188 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 CCND2P30279 289 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 TXKP42681 527 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 TM4SF4P48230 202 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 ALDH5A1P51649 535 aaPredicted RBP9.4□□□□□ -0.9
VPS29-203ENST00000546588 NLRP12P59046 1061 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 CCNA1P78396 465 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 MORC3Q14149 939 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 KARSQ15046 597 aaKnown RBP9.4□□□□□ -0.9
VPS29-203ENST00000546588 CAMK4Q16566 473 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 L1TD1Q5T7N2 865 aaKnown RBP9.4□□□□□ -0.9
VPS29-203ENST00000546588 KRT79Q5XKE5 535 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 FOXR2Q6PJQ5 311 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 LRRC69Q6ZNQ3 347 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 PLA2G4DQ86XP0 818 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 FAM43AQ8N2R8 423 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 CEP120Q8N960 986 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 FRMD6Q96NE9 622 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 C7orf25Q9BPX7 421 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 SDF4Q9BRK5 362 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 TGIF2Q9GZN2 237 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 RBSNQ9H1K0 784 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 ACBD3Q9H3P7 528 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 ZNF408Q9H9D4 720 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 HOMER2Q9NSB8 354 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 TBC1D22BQ9NU19 505 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 ANO10Q9NW15 660 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 FNDC3AQ9Y2H6 1198 aaKnown RBP9.4□□□□□ -0.9
VPS29-203ENST00000546588 DIS3Q9Y2L1 958 aaKnown RBP9.4□□□□□ -0.9
VPS29-203ENST00000546588 PCDHA5Q9Y5H7 936 aa9.4□□□□□ -0.9
VPS29-203ENST00000546588 IKBKBO14920 756 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 FOXN1O15353 648 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 KLRC4O43908 158 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 TNFRSF21O75509 655 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 RHOBTB3O94955 611 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 ARP10275 920 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 KCNA2P16389 499 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 BMP6P22004 513 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 STAT6P42226 847 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 ARSDP51689 593 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 ITGB3BPQ13352 177 aaPredicted RBP9.39□□□□□ -0.91
VPS29-203ENST00000546588 PNOCQ13519 176 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 MTMR1Q13613 665 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 UBAP2LQ14157 1087 aaKnown RBP9.39□□□□□ -0.91
VPS29-203ENST00000546588 GRB14Q14449 540 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 IQCB1Q15051 598 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 RRAGBQ5VZM2 374 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 SASS6Q6UVJ0 657 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 MAMDC4Q6UXC1 1216 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 NSMFQ6X4W1 530 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 CKAP2LQ8IYA6 745 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 CEP57L1Q8IYX8 460 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 GPRC5AQ8NFJ5 357 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 ERMNQ8TAM6 284 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 LARP4BQ92615 738 aaKnown RBP9.39□□□□□ -0.91
VPS29-203ENST00000546588 RAD54LQ92698 747 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 DHX58Q96C10 678 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 CALML4Q96GE6 196 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 TRIM9Q9C026 710 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 NUCKS1Q9H1E3 243 aaKnown RBP9.39□□□□□ -0.91
VPS29-203ENST00000546588 KCND2Q9NZV8 630 aa9.39□□□□□ -0.91
VPS29-203ENST00000546588 ADD3Q9UEY8 706 aaKnown RBP9.39□□□□□ -0.91
VPS29-203ENST00000546588 PVALEFA0A1B0GWK0 134 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 RASSF10A6NK89 507 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 B4DLN1 442 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 IGF2BP3O00425 579 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS29-203ENST00000546588 EIF3JO75822 258 aaKnown RBP9.38□□□□□ -0.91
VPS29-203ENST00000546588 SMC2O95347 1197 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 CTSHP09668 335 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 TGFB3P10600 412 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 EIF2AK2P19525 551 aaKnown RBP9.38□□□□□ -0.91
VPS29-203ENST00000546588 CDC25AP30304 524 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 SFNP31947 248 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 MAP2K3P46734 347 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 SLC12A3P55017 1021 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 SNRPNP63162 240 aaKnown RBP9.38□□□□□ -0.91
VPS29-203ENST00000546588 EPHA7Q15375 998 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 LRCH2Q5VUJ6 765 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 ARHGEF16Q5VV41 709 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 ZNF746Q6NUN9 644 aaPredicted RBP9.38□□□□□ -0.91
VPS29-203ENST00000546588 C17orf99Q6UX52 265 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 NLRX1Q86UT6 975 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 CATSPER3Q86XQ3 398 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 SMAP1Q8IYB5 467 aaPredicted RBP9.38□□□□□ -0.91
VPS29-203ENST00000546588 MSL3Q8N5Y2 521 aaKnown RBP9.38□□□□□ -0.91
VPS29-203ENST00000546588 PDILTQ8N807 584 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 EPS8L3Q8TE67 593 aaKnown RBP9.38□□□□□ -0.91
VPS29-203ENST00000546588 SNX29Q8TEQ0 813 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 KCNN1Q92952 543 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 CCDC74AQ96AQ1 378 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 PDLIM2Q96JY6 352 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 ZNF577Q9BSK1 485 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 TEKT3Q9BXF9 490 aa9.38□□□□□ -0.91
VPS29-203ENST00000546588 OXCT2Q9BYC2 517 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms