RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 NLRP7Q8WX94 980 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 SCLT1Q96NL6 688 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 POP1Q99575 1024 aaKnown RBP9.52□□□□□ -0.89
USP28-215ENST00000545608 PDRG1Q9NUG6 133 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 SEPT9Q9UHD8 586 aaPredicted RBP9.52□□□□□ -0.89
USP28-215ENST00000545608 LZTS1Q9Y250 596 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 A0A087WZ62 844 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 DDX11L8A8MPP1 907 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 HIDE1A8MVS5 230 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 LOC730098B7Z3J9 87 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 EML1O00423 815 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 SLC37A4O43826 429 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 EOMESO95936 686 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 SCRN1Q12765 414 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 NONOQ15233 471 aaKnown RBP eCLIP9.51□□□□□ -0.89
USP28-215ENST00000545608 GALNT17Q6IS24 598 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 PDE12Q6L8Q7 609 aaKnown RBP9.51□□□□□ -0.89
USP28-215ENST00000545608 CPLX2Q6PUV4 134 aaKnown RBP9.51□□□□□ -0.89
USP28-215ENST00000545608 MOXD1Q6UVY6 613 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 HFE2Q6ZVN8 426 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 KSR1Q8IVT5 923 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 ABI1Q8IZP0 508 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 SLC39A11Q8N1S5 342 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 LRRC43Q8N309 656 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 HELQQ8TDG4 1101 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 SUSD6Q92537 303 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 ZNF558Q96NG5 402 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 CDCA3Q99618 268 aaPredicted RBP9.51□□□□□ -0.89
USP28-215ENST00000545608 TCF25Q9BQ70 676 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 FDXACB1Q9BRP7 624 aaPredicted RBP9.51□□□□□ -0.89
USP28-215ENST00000545608 GCOM2Q9BZD3 368 aaPredicted RBP9.51□□□□□ -0.89
USP28-215ENST00000545608 S1PR5Q9H228 398 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 GJB4Q9NTQ9 266 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 DDX25Q9UHL0 483 aaKnown RBP9.51□□□□□ -0.89
USP28-215ENST00000545608 PUF60Q9UHX1 559 aaKnown RBP9.51□□□□□ -0.89
USP28-215ENST00000545608 KIAA1671Q9BY89 1806 aa9.51□□□□□ -0.89
USP28-215ENST00000545608 NT5C1B-RDH14C9J2C7 533 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 MAFO75444 373 aaPredicted RBP9.5□□□□□ -0.89
USP28-215ENST00000545608 TECP42680 631 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 NPEPPSP55786 919 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 PSMC5P62195 406 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 KRT17Q04695 432 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 CBX2Q14781 532 aaPredicted RBP9.5□□□□□ -0.89
USP28-215ENST00000545608 LETM2Q2VYF4 491 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 LONRF3Q496Y0 759 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 PLA2G4FQ68DD2 849 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 ANKRD54Q6NXT1 300 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 LLGL2Q6P1M3 1020 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 SYCE2Q6PIF2 218 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 TMEM184AQ6ZMB5 413 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 ANO5Q75V66 913 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 KRT25Q7Z3Z0 450 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 RHPN2Q8IUC4 686 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 EDAQ92838 391 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 RPGRIP1Q96KN7 1286 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 PHF20Q9BVI0 1012 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 APOL5Q9BWW9 433 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 PHF7Q9BWX1 381 aaPredicted RBP9.5□□□□□ -0.89
USP28-215ENST00000545608 KCNMB3Q9NPA1 279 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 NGRNQ9NPE2 291 aaKnown RBP9.5□□□□□ -0.89
USP28-215ENST00000545608 ENTPD7Q9NQZ7 604 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 CHST12Q9NRB3 414 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 DACT1Q9NYF0 836 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 SPG21Q9NZD8 308 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 SUCLA2Q9P2R7 463 aaPredicted RBP9.5□□□□□ -0.89
USP28-215ENST00000545608 WRAP73Q9P2S5 460 aaPredicted RBP9.5□□□□□ -0.89
USP28-215ENST00000545608 VAV3Q9UKW4 847 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 TPCN1Q9ULQ1 816 aa9.5□□□□□ -0.89
USP28-215ENST00000545608 FNDC1Q4ZHG4 1894 aaPredicted RBP9.5□□□□□ -0.89
USP28-215ENST00000545608 MYH9P35579 1960 aaKnown RBP9.5□□□□□ -0.89
USP28-215ENST00000545608 PLXNA4Q9HCM2 1894 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 MEIS3P2A8K0S8 358 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 CTDNEP1O95476 244 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 HOXB3P14651 431 aaPredicted RBP9.49□□□□□ -0.89
USP28-215ENST00000545608 PPM1AP35813 382 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 PHKA2P46019 1235 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 DNM2P50570 870 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 CDC42EP1Q00587 391 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 PPP2R5CQ13362 524 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 EARS2Q5JPH6 523 aaKnown RBP9.49□□□□□ -0.89
USP28-215ENST00000545608 TMC7Q7Z402 723 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 ZNF410Q86VK4 478 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 FAM177A1Q8N128 213 aaPredicted RBP9.49□□□□□ -0.89
USP28-215ENST00000545608 MRPL43Q8N983 215 aaKnown RBP9.49□□□□□ -0.89
USP28-215ENST00000545608 HAS1Q92839 578 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 LPPQ93052 612 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 FBXL18Q96ME1 805 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 NLRP4Q96MN2 994 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 TRAIPQ9BWF2 469 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 SLKQ9H2G2 1235 aaPredicted RBP9.49□□□□□ -0.89
USP28-215ENST00000545608 CYP26B1Q9NR63 512 aa9.49□□□□□ -0.89
USP28-215ENST00000545608 CCDC194A0A1B0GVG4 234 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 FSD2A1L4K1 749 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 C2orf71A6NGG8 1288 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 PFKFB2O60825 505 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 P4HBP07237 508 aaKnown RBP9.48□□□□□ -0.89
USP28-215ENST00000545608 SFPQP23246 707 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP28-215ENST00000545608 QARSP47897 775 aaKnown RBP9.48□□□□□ -0.89
USP28-215ENST00000545608 BCAR1P56945 870 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 ZXDAP98168 799 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms