RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 HOXA2O43364 376 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 TSPAN1O60635 241 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 EYA4O95677 639 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 AXLP30530 894 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 CTNNB1P35222 781 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 PTPAQ15257 358 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 SF3A1Q15459 793 aaKnown RBP12.68□□□□□ -0.38
YBX3-216ENST00000544622 PAN2Q504Q3 1202 aaKnown RBP12.68□□□□□ -0.38
YBX3-216ENST00000544622 CDCA2Q69YH5 1023 aaPredicted RBP12.68□□□□□ -0.38
YBX3-216ENST00000544622 KCNK18Q7Z418 384 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 MRPL10Q7Z7H8 261 aaKnown RBP12.68□□□□□ -0.38
YBX3-216ENST00000544622 PPM1EQ8WY54 764 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 RSPH1Q8WYR4 309 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 AK8Q96MA6 479 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 PNMA5Q96PV4 448 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 C11orf84Q9BUA3 381 aaPredicted RBP12.68□□□□□ -0.38
YBX3-216ENST00000544622 POLR3FQ9H1D9 316 aaPredicted RBP12.68□□□□□ -0.38
YBX3-216ENST00000544622 FZD8Q9H461 694 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 PIN4Q9Y237 131 aaKnown RBP12.68□□□□□ -0.38
YBX3-216ENST00000544622 A0A1B0GUA9 196 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 VPS37CA5D8V6 355 aaPredicted RBP12.67□□□□□ -0.38
YBX3-216ENST00000544622 ARHGEF35A5YM69 484 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 VWA3AA6NCI4 1184 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 MEIS3P2A8K0S8 358 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 STX6O43752 255 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 BMP15O95972 392 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 SKIP12755 728 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 DNAJB1P25685 340 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 RAB27AP51159 221 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 GRIN1Q05586 938 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 TFDP1Q14186 410 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 COL19A1Q14993 1142 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 TWF2Q6IBS0 349 aaKnown RBP12.67□□□□□ -0.38
YBX3-216ENST00000544622 PPP4R3CPQ6ZMV5 832 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 C1orf186Q6ZWK4 172 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 MAEAQ7L5Y9 396 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 KLHL23Q8NBE8 558 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 SPPL3Q8TCT6 385 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 BSNDQ8WZ55 320 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 LMAN2LQ9H0V9 348 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 HCSTQ9UBK5 93 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 DNM3Q9UQ16 869 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 PCDHB2Q9Y5E7 798 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 MORC2Q9Y6X9 1032 aaPredicted RBP12.67□□□□□ -0.38
YBX3-216ENST00000544622 NLRC5Q86WI3 1866 aa12.67□□□□□ -0.38
YBX3-216ENST00000544622 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.66□□□□□ -0.38
YBX3-216ENST00000544622 OFD1O75665 1012 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 ITGB1P05556 798 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 ARF4P18085 180 aaPredicted RBP12.66□□□□□ -0.38
YBX3-216ENST00000544622 PTPROQ16827 1216 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 FAM187BQ17R55 369 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 TMEM119Q4V9L6 283 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 RINT1Q6NUQ1 792 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 FAM173BQ6P4H8 233 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 AGMOQ6ZNB7 445 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 DAW1Q8N136 415 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 SMG8Q8ND04 991 aaKnown RBP12.66□□□□□ -0.38
YBX3-216ENST00000544622 ATXN2LQ8WWM7 1075 aaKnown RBP12.66□□□□□ -0.38
YBX3-216ENST00000544622 PRIMPOLQ96LW4 560 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 CCDC43Q96MW1 224 aaKnown RBP12.66□□□□□ -0.38
YBX3-216ENST00000544622 NT5C3AQ9H0P0 336 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 ALG13Q9NP73 1137 aaKnown RBP12.66□□□□□ -0.38
YBX3-216ENST00000544622 FOXD4L1Q9NU39 408 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 CLIC4Q9Y696 253 aa12.66□□□□□ -0.38
YBX3-216ENST00000544622 INO80B-WBP1J3KQ70 363 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 INPPL1O15357 1258 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 B4GALT5O43286 388 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 SLC26A4O43511 780 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 NCLP19338 710 aaKnown RBP12.65□□□□□ -0.38
YBX3-216ENST00000544622 IBSPP21815 317 aaPredicted RBP12.65□□□□□ -0.38
YBX3-216ENST00000544622 LONP1P36776 959 aaKnown RBP12.65□□□□□ -0.38
YBX3-216ENST00000544622 NAMPTP43490 491 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 SLC12A3P55017 1021 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 PLCB3Q01970 1234 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 MAPK7Q13164 816 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 LRRC43Q8N309 656 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 MICALL1Q8N3F8 863 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 SYT2Q8N9I0 419 aaPredicted RBP12.65□□□□□ -0.38
YBX3-216ENST00000544622 HELQQ8TDG4 1101 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 LRRC15Q8TF66 581 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 KIFAP3Q92845 792 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 LPPQ93052 612 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 CCDC51Q96ER9 411 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 NTPCRQ9BSD7 190 aaKnown RBP12.65□□□□□ -0.38
YBX3-216ENST00000544622 CCDC113Q9H0I3 377 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 CSRNP2Q9H175 543 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 ZSCAN16Q9H4T2 348 aaPredicted RBP12.65□□□□□ -0.38
YBX3-216ENST00000544622 POLD4Q9HCU8 107 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 THEGQ9P2T0 379 aa12.65□□□□□ -0.38
YBX3-216ENST00000544622 CUL9Q8IWT3 2517 aa12.64□□□□□ -0.39
YBX3-216ENST00000544622 TTLL13PA6NNM8 815 aa12.64□□□□□ -0.39
YBX3-216ENST00000544622 ERLIN2O94905 339 aa12.64□□□□□ -0.39
YBX3-216ENST00000544622 EDN1P05305 212 aa12.64□□□□□ -0.39
YBX3-216ENST00000544622 PDIA4P13667 645 aaKnown RBP12.64□□□□□ -0.39
YBX3-216ENST00000544622 LAG3P18627 525 aa12.64□□□□□ -0.39
YBX3-216ENST00000544622 GUCY2CP25092 1073 aa12.64□□□□□ -0.39
YBX3-216ENST00000544622 AFF1P51825 1210 aaKnown RBP12.64□□□□□ -0.39
YBX3-216ENST00000544622 UBE3AQ05086 875 aa12.64□□□□□ -0.39
YBX3-216ENST00000544622 NOTUMQ6P988 496 aa12.64□□□□□ -0.39
YBX3-216ENST00000544622 CABP7Q86V35 215 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms