RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	KLHL40	Q2TBA0	621 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	FBXO47	Q5MNV8	452 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	FAM26F	Q5R3K3	315 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	L1TD1	Q5T7N2	865 aa	Known RBP	11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	ISM2	Q6H9L7	571 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	CATSPER4	Q7RTX7	472 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	HAUS6	Q7Z4H7	955 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	DEFB128	Q7Z7B8	93 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	GSDMA	Q96QA5	445 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	NTPCR	Q9BSD7	190 aa	Known RBP	11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	WNT8A	Q9H1J5	351 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	IFT122	Q9HBG6	1241 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	SLC39A2	Q9NP94	309 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	KIAA1468	Q9P260	1216 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	NOC2L	Q9Y3T9	749 aa	Known RBP	11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	PCDHB13	Q9Y5F0	798 aa		11.19	□□□□□ -0.62
CPSF7-221	ENST00000543545	MYH15	Q9Y2K3	1946 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	FRMD3	A2A2Y4	597 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	PARN	O95453	639 aa	Known RBP	11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	PRKCB	P05771	671 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	MAPT	P10636	758 aa	Known RBP	11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	ITGB8	P26012	769 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	CD52	P31358	61 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	PSMD2	Q13200	908 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	LPIN1	Q14693	890 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	KCNB1	Q14721	858 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	MFSD5	Q6N075	450 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	TRAF7	Q6Q0C0	670 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	ZNF720	Q7Z2F6	126 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	RPUSD2	Q8IZ73	545 aa	Known RBP	11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	SYCP3	Q8IZU3	236 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	USP38	Q8NB14	1042 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	TMEM161B	Q8NDZ6	487 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	TMEM40	Q8WWA1	233 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	SEPT8	Q92599	483 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	BAD	Q92934	168 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	BICD1	Q96G01	975 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	OLFML3	Q9NRN5	406 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	PRMT7	Q9NVM4	692 aa	Predicted RBP	11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	MAN1B1	Q9UKM7	699 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	ST3GAL5	Q9UNP4	418 aa		11.18	□□□□□ -0.62
CPSF7-221	ENST00000543545	TCHH	Q07283	1943 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	PHLPP2	Q6ZVD8	1323 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	ADGRA3	Q8IWK6	1321 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	NBN	O60934	754 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	PRPF6	O94906	941 aa	Known RBP	11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	RHOBTB3	O94955	611 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	KIF20A	O95235	890 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	MYB	P10242	640 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	CSF2RA	P15509	400 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	ZSCAN20	P17040	1043 aa	Predicted RBP	11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	IBSP	P21815	317 aa	Predicted RBP	11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	ABCD1	P33897	745 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	RFC2	P35250	354 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	SARS	P49591	514 aa	Known RBP	11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	NCKAP1L	P55160	1127 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	MBTD1	Q05BQ5	628 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	STK4	Q13043	487 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	PRPF4B	Q13523	1007 aa	Known RBP	11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	CDCA2	Q69YH5	1023 aa	Predicted RBP	11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	TSHZ1	Q6ZSZ6	1077 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	FAM228A	Q86W67	206 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	ACCS	Q96QU6	501 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	NFKBIZ	Q9BYH8	718 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	IFIH1	Q9BYX4	1025 aa	Known RBP	11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	TMEM134	Q9H6X4	195 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	MINDY3	Q9H8M7	445 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	AGO3	Q9H9G7	860 aa	Known RBP	11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	TMEM63C	Q9P1W3	806 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	PCDH10	Q9P2E7	1040 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	ARHGAP28	Q9P2N2	729 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	PADI3	Q9ULW8	664 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	TBX20	Q9UMR3	447 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	EXOC7	Q9UPT5	735 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	SQOR	Q9Y6N5	450 aa		11.17	□□□□□ -0.62
CPSF7-221	ENST00000543545	BRCA2	P51587	3418 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	ACKR2	O00590	384 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	ACR	P10323	421 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	SCP2	P22307	547 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	MATR3	P43243	847 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	GTF2B	Q00403	316 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	FPGS	Q05932	587 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	PPIG	Q13427	754 aa	Known RBP eCLIP	11.16	□□□□□ -0.62	8e-8	■■■□□ 16
CPSF7-221	ENST00000543545	ALCAM	Q13740	583 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	MBTPS1	Q14703	1052 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	SASS6	Q6UVJ0	657 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	NELFCD	Q8IXH7	590 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	SMYD4	Q8IYR2	804 aa	Predicted RBP	11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	MYOCD	Q8IZQ8	938 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	GLIS3	Q8NEA6	775 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	DBF4B	Q8NFT6	615 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	FIZ1	Q96SL8	496 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	TCHP	Q9BT92	498 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	MRPL4	Q9BYD3	311 aa	Known RBP	11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	FGFBP2	Q9BYJ0	223 aa		11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	GTPBP4	Q9BZE4	634 aa	Known RBP	11.16	□□□□□ -0.62
CPSF7-221	ENST00000543545	OSBPL7	Q9BZF2	842 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms