RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 PHF20L1A8MW92 1017 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 ZRANB2O95218 330 aaKnown RBP eCLIP17.31■□□□□ 0.361e-7■■■■■ 34.2
VARS2-212ENST00000542001 CALCAP01258 141 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 MMTAG2Q9BU76 263 aaKnown RBP17.31■□□□□ 0.36
VARS2-212ENST00000542001 PCSK1NQ9UHG2 260 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 CLDN3O15551 220 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 STRIP1Q5VSL9 837 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 CCDC137Q6PK04 289 aaKnown RBP17.31■□□□□ 0.36
VARS2-212ENST00000542001 SRLQ86TD4 932 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 PRPF38AQ8NAV1 312 aaKnown RBP17.31■□□□□ 0.36
VARS2-212ENST00000542001 NYAP2Q9P242 653 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 TXNDC16Q9P2K2 825 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 DBR1Q9UK59 544 aaKnown RBP17.31■□□□□ 0.36
VARS2-212ENST00000542001 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.31■□□□□ 0.36
VARS2-212ENST00000542001 KRT1P04264 644 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 MMEP08473 750 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 RWDD2BP57060 319 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 NPY5RQ15761 445 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 SAMD7Q7Z3H4 446 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 TNFRSF25Q93038 417 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 MPHOSPH6Q99547 160 aaKnown RBP17.31■□□□□ 0.36
VARS2-212ENST00000542001 PPP1R12CQ9BZL4 782 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 MAD1L1Q9Y6D9 718 aa17.31■□□□□ 0.36
VARS2-212ENST00000542001 A0A087WUV0 522 aaPredicted RBP17.3■□□□□ 0.36
VARS2-212ENST00000542001 KDM4FA0A1W2PPD8 638 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 NAB2Q15742 525 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 CASKIN2Q8WXE0 1202 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 RFFLQ8WZ73 363 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 CSADQ9Y600 493 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 YWHABP31946 246 aaKnown RBP17.3■□□□□ 0.36
VARS2-212ENST00000542001 IRX4P78413 519 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 IFRD2Q12894 506 aaPredicted RBP17.3■□□□□ 0.36
VARS2-212ENST00000542001 TRADDQ15628 312 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 BBS9Q3SYG4 887 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 FAM160B2Q86V87 743 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 ACSF2Q96CM8 615 aaPredicted RBP17.3■□□□□ 0.36
VARS2-212ENST00000542001 TLR10Q9BXR5 811 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 PARP2Q9UGN5 583 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 ESYT2A0FGR8 921 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 LRRC10BA6NIK2 292 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 YWHAGP61981 247 aaKnown RBP eCLIP17.3■□□□□ 0.36
VARS2-212ENST00000542001 BASP1P80723 227 aaKnown RBP17.3■□□□□ 0.36
VARS2-212ENST00000542001 CCDC197Q8NCU1 140 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 MSANTD4Q8NCY6 345 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 BCAS3Q9H6U6 928 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 KCNH7Q9NS40 1196 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 HSPBP1Q9NZL4 362 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 FEZ2Q9UHY8 353 aaPredicted RBP17.3■□□□□ 0.36
VARS2-212ENST00000542001 LCMT1Q9UIC8 334 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 PNMA2Q9UL42 364 aa17.3■□□□□ 0.36
VARS2-212ENST00000542001 H7C0C1 242 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 CCDC188H7C350 402 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 ATP5OP48047 213 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 HAS1Q92839 578 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 AGPAT1Q99943 283 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 ALDH3A1P30838 453 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 HHIPL2Q6UWX4 724 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 TADA2BQ86TJ2 420 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 ATP6V1G3Q96LB4 118 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 C9orf72Q96LT7 481 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 APEX2Q9UBZ4 518 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 ALG6Q9Y672 507 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 PLEKHG2Q9H7P9 1386 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 NFIBO00712 420 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 ATP2A2P16615 1042 aaKnown RBP17.29■□□□□ 0.36
VARS2-212ENST00000542001 ATP5DP30049 168 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 PAPD7Q5XG87 772 aaKnown RBP17.29■□□□□ 0.36
VARS2-212ENST00000542001 TRIM68Q6AZZ1 485 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 TRIM59Q8IWR1 403 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 SLC20A1Q8WUM9 679 aa17.29■□□□□ 0.36
VARS2-212ENST00000542001 A6NNZ2 444 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 WDR64B1ANS9 1081 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 STAM2O75886 525 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 TUBB8Q3ZCM7 444 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 DCAF15Q66K64 600 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 SYT2Q8N9I0 419 aaPredicted RBP17.28■□□□□ 0.36
VARS2-212ENST00000542001 RPAP3Q9H6T3 665 aaPredicted RBP17.28■□□□□ 0.36
VARS2-212ENST00000542001 TARSL2A2RTX5 802 aaKnown RBP17.28■□□□□ 0.36
VARS2-212ENST00000542001 NKRFO15226 690 aaKnown RBP eCLIP17.28■□□□□ 0.36
VARS2-212ENST00000542001 SAT1P21673 171 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 CUL1Q13616 776 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 APOBEC3HQ6NTF7 200 aaKnown RBP17.28■□□□□ 0.36
VARS2-212ENST00000542001 DNAJC24Q6P3W2 148 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 CBWD2Q8IUF1 395 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 ZBTB8OSQ8IWT0 167 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 C4orf32Q8N8J7 132 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 USP38Q8NB14 1042 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 TAAR1Q96RJ0 339 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 TOPORSQ9NS56 1045 aaPredicted RBP17.28■□□□□ 0.36
VARS2-212ENST00000542001 KLHL14Q9P2G3 628 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 ZNF70Q9UC06 446 aaPredicted RBP17.28■□□□□ 0.36
VARS2-212ENST00000542001 IVNS1ABPQ9Y6Y0 642 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 CACNA1FO60840 1977 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 HMGB1P1B2RPK0 211 aaPredicted RBP17.28■□□□□ 0.36
VARS2-212ENST00000542001 RXRBP28702 533 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 EPHA7Q15375 998 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 SLC27A3Q5K4L6 730 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 ZNF449Q6P9G9 518 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 RHOT2Q8IXI1 618 aa17.28■□□□□ 0.36
VARS2-212ENST00000542001 EFCAB13Q8IY85 973 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms