RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 PLVAPQ9BX97 442 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 CCSER1Q9C0I3 900 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 CSRNP2Q9H175 543 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 MAP3K20Q9NYL2 800 aaKnown RBP9.33□□□□□ -0.92
CHD4-208ENST00000540960 GTF2IRD1Q9UHL9 959 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 MRPL11Q9Y3B7 192 aaKnown RBP9.33□□□□□ -0.92
CHD4-208ENST00000540960 RWDD3Q9Y3V2 267 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 PCDHA1Q9Y5I3 950 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 MRPL42Q9Y6G3 142 aaKnown RBP9.33□□□□□ -0.92
CHD4-208ENST00000540960 FRMPD2Q68DX3 1309 aaPredicted RBP9.32□□□□□ -0.92
CHD4-208ENST00000540960 DMXL2Q8TDJ6 3036 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 VWA3AA6NCI4 1184 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 SPDYE3A6NKU9 549 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 RSPH10B2B2RC85 870 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 TBX3O15119 743 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 POLR2DO15514 142 aaKnown RBP9.32□□□□□ -0.92
CHD4-208ENST00000540960 CBFA2T2O43439 604 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 NARSO43776 548 aaKnown RBP9.32□□□□□ -0.92
CHD4-208ENST00000540960 GDF9O60383 454 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 KPNA6O60684 536 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 NDUFB10O96000 172 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 RSPH10BP0C881 870 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 ERCC5P28715 1186 aaPredicted RBP9.32□□□□□ -0.92
CHD4-208ENST00000540960 SPEM2Q0P670 501 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 PTK7Q13308 1070 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 CDC37Q16543 378 aaPredicted RBP9.32□□□□□ -0.92
CHD4-208ENST00000540960 DUSP6Q16828 381 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 MUM1L1Q5H9M0 696 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 NT5DC1Q5TFE4 455 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 LLGL2Q6P1M3 1020 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 MCF2L2Q86YR7 1114 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 SLFN12Q8IYM2 578 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 P2RX5Q93086 422 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 ZNF689Q96CS4 500 aaPredicted RBP9.32□□□□□ -0.92
CHD4-208ENST00000540960 TMEM121BQ9BXQ6 578 aaPredicted RBP9.32□□□□□ -0.92
CHD4-208ENST00000540960 UBA5Q9GZZ9 404 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 ACAD9Q9H845 621 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 FBXL21Q9UKT6 434 aa9.32□□□□□ -0.92
CHD4-208ENST00000540960 CTDP1Q9Y5B0 961 aaPredicted RBP9.32□□□□□ -0.92
CHD4-208ENST00000540960 ABCB11O95342 1321 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 RALGAPA1Q6GYQ0 2036 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 TMEM232C9JQI7 657 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 PIK3CDO00329 1044 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 CCNT1O60563 726 aaKnown RBP9.31□□□□□ -0.92
CHD4-208ENST00000540960 MMP3P08254 477 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 GLULP15104 373 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 MSNP26038 577 aaKnown RBP9.31□□□□□ -0.92
CHD4-208ENST00000540960 CDC25BP30305 580 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 THPOP40225 353 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 ERVFC1P60507 584 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 STIM1Q13586 685 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 BTG3Q14201 252 aaPredicted RBP9.31□□□□□ -0.92
CHD4-208ENST00000540960 CALCRLQ16602 461 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 INF2Q27J81 1249 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 LETM2Q2VYF4 491 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 RRAGBQ5VZM2 374 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 TMEM184AQ6ZMB5 413 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 KCTD1Q719H9 257 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 ZDHHC14Q8IZN3 488 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 ANKRD20A12PQ8NF67 263 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 ERMNQ8TAM6 284 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 NETO1Q8TDF5 533 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 MICAL1Q8TDZ2 1067 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 TBCKQ8TEA7 893 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 SEPT8Q92599 483 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 CDK5RAP3Q96JB5 506 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 CBX8Q9HC52 389 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 BMP2KQ9NSY1 1161 aaPredicted RBP9.31□□□□□ -0.92
CHD4-208ENST00000540960 RNF146Q9NTX7 359 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 STK17AQ9UEE5 414 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 SMG5Q9UPR3 1016 aaKnown RBP9.31□□□□□ -0.92
CHD4-208ENST00000540960 EMSYQ7Z589 1322 aa9.31□□□□□ -0.92
CHD4-208ENST00000540960 TENM4Q6N022 2769 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 USP9XQ93008 2570 aaPredicted RBP9.3□□□□□ -0.92
CHD4-208ENST00000540960 CYP3A7-CYP3A51PA0A087WV96 503 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 LRRN2O75325 713 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 ARIH2O95376 493 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 ADCY5O95622 1261 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 CFHP08603 1231 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 CYP3A7P24462 503 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 STAT6P42226 847 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 FXR2P51116 673 aaKnown RBP eCLIP9.3□□□□□ -0.921e-9■■■■■ 30.6
CHD4-208ENST00000540960 MYL5Q02045 173 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 TBC1D8BQ0IIM8 1120 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 QRICH1Q2TAL8 776 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 LONRF3Q496Y0 759 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 BRDTQ58F21 947 aaPredicted RBP9.3□□□□□ -0.92
CHD4-208ENST00000540960 KRT79Q5XKE5 535 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 ZSCAN30Q86W11 494 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 AFG1LQ8WV93 481 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 MRFAP1L1Q96HT8 127 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 FAM20AQ96MK3 541 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 CLIC6Q96NY7 704 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 BBC3Q96PG8 261 aaPredicted RBP9.3□□□□□ -0.92
CHD4-208ENST00000540960 TRIM5Q9C035 493 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 NT5C3AQ9H0P0 336 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 DNAJC25Q9H1X3 360 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 CYP39A1Q9NYL5 469 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 TTC3P53804 2025 aa9.3□□□□□ -0.92
CHD4-208ENST00000540960 KDM3AQ9Y4C1 1321 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms