RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 MXD3Q9BW11 206 aa13.93□□□□□ -0.18
MSH6-210ENST00000540021 SPATS2LQ9NUQ6 558 aaKnown RBP13.93□□□□□ -0.18
MSH6-210ENST00000540021 ANAPC7Q9UJX3 599 aa13.93□□□□□ -0.18
MSH6-210ENST00000540021 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.93□□□□□ -0.18
MSH6-210ENST00000540021 EXOC1LA0A1B0GW35 172 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 RWDD2BP57060 319 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 KRT17Q04695 432 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 ACCSLQ4AC99 568 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 FYB2Q5VWT5 728 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 NAIF1Q69YI7 327 aaPredicted RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 YTHDF3Q7Z739 585 aaKnown RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 P3H4Q92791 437 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 ARHGEF26Q96DR7 871 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 RUSC1Q9BVN2 902 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.92□□□□□ -0.18
MSH6-210ENST00000540021 EMSYQ7Z589 1322 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 ZNF335Q9H4Z2 1342 aaPredicted RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 AGTP01019 485 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 MXI1P50539 228 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 ELF3P78545 371 aaPredicted RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 PREPLQ4J6C6 727 aaPredicted RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 SLC51AQ86UW1 340 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 ZNF564Q8TBZ8 553 aaPredicted RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 ATG4AQ8WYN0 398 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 PIK3R5Q8WYR1 880 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 EIF2AK1Q9BQI3 630 aaKnown RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 TMOD2Q9NZR1 351 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 LARSQ9P2J5 1176 aaKnown RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 DCTN4Q9UJW0 460 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 FOXN3O00409 490 aaPredicted RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 DHX34Q14147 1143 aaKnown RBP13.92□□□□□ -0.18
MSH6-210ENST00000540021 C2CD6Q53TS8 623 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 FAM102BQ5T8I3 360 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 DPH6Q7L8W6 267 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 SCYL3Q8IZE3 742 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 SLC20A1Q8WUM9 679 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 AGPAT1Q99943 283 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 TAS2R14Q9NYV8 317 aa13.92□□□□□ -0.18
MSH6-210ENST00000540021 MYH13Q9UKX3 1938 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 FOXO6A8MYZ6 492 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 CYP26A1O43174 497 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 KCNJ2P63252 427 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 EPC2Q52LR7 807 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 CPSF2Q9P2I0 782 aaKnown RBP13.91□□□□□ -0.18
MSH6-210ENST00000540021 PHF2O75151 1096 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 ORC2Q13416 577 aaPredicted RBP13.91□□□□□ -0.18
MSH6-210ENST00000540021 GRAPQ13588 217 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 RFX8Q6ZV50 586 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 PPFIBP2Q8ND30 876 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 GRAPLQ8TC17 118 aaPredicted RBP13.91□□□□□ -0.18
MSH6-210ENST00000540021 RBM17Q96I25 401 aaKnown RBP13.91□□□□□ -0.18
MSH6-210ENST00000540021 STK33Q9BYT3 514 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 MIF4GDA9UHW6 222 aaKnown RBP13.91□□□□□ -0.18
MSH6-210ENST00000540021 GOLGA8SH3BPF8 625 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 GOLGA8MH3BSY2 632 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 MYCLP12524 364 aaPredicted RBP13.91□□□□□ -0.18
MSH6-210ENST00000540021 HSPA6P17066 643 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 GAP43P17677 238 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 DRD4P21917 467 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 MSH2P43246 934 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 GPSM2P81274 684 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 GIT2Q14161 759 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 SCFD2Q8WU76 684 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 KRT35Q92764 455 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 GANQ9H2C0 597 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 TRPC6Q9Y210 931 aa13.91□□□□□ -0.18
MSH6-210ENST00000540021 CFAP73A6NFT4 308 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 RAD23BP54727 409 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 ANKRD20A3Q5VUR7 823 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 MIER3Q7Z3K6 550 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 IRF2BP2Q7Z5L9 587 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 PPP1R14CQ8TAE6 165 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 RBM46Q8TBY0 533 aaKnown RBP13.9□□□□□ -0.18
MSH6-210ENST00000540021 HAS1Q92839 578 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 TEKT1Q969V4 418 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 SAAL1Q96ER3 474 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 ZNF577Q9BSK1 485 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 ALG13Q9NP73 1137 aaKnown RBP13.9□□□□□ -0.18
MSH6-210ENST00000540021 MYH15Q9Y2K3 1946 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 ZBTB39O15060 712 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 LCA5LO95447 670 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 TMEM253P0C7T8 217 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 ATP2A2P16615 1042 aaKnown RBP13.9□□□□□ -0.18
MSH6-210ENST00000540021 RPL21P46778 160 aaKnown RBP13.9□□□□□ -0.18
MSH6-210ENST00000540021 MARCKSL1P49006 195 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 STRN3Q13033 797 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 EPM2AIP1Q7L775 607 aaPredicted RBP13.9□□□□□ -0.18
MSH6-210ENST00000540021 PASD1Q8IV76 773 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 SUPT20HQ8NEM7 779 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 CYP2W1Q8TAV3 490 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 FNBP1Q96RU3 617 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 POP1Q99575 1024 aaKnown RBP13.9□□□□□ -0.18
MSH6-210ENST00000540021 CARD9Q9H257 536 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 APEX2Q9UBZ4 518 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 LRRD1A4D1F6 860 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 TNNI1P19237 187 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 ATP2B4P23634 1241 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 FNTAP49354 379 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 ASTE1Q2TB18 679 aaPredicted RBP13.9□□□□□ -0.18
MSH6-210ENST00000540021 ANKRD35Q8N283 1001 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms