RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 MACROD2A1Z1Q3 448 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 XYLBO75191 536 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ALBP02768 609 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 CLTAP09496 248 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 LINGO3P0C6S8 592 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 CCNB1P14635 433 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ACADSP16219 412 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ATP6V1C1P21283 382 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 TARSP26639 723 aaKnown RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 GRNP28799 593 aaKnown RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 ARID4AP29374 1257 aaPredicted RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 ATP5DP30049 168 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 CDC25AP30304 524 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ADD2P35612 726 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 PRCPP42785 496 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 PSMC4P43686 418 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 SLC7A5Q01650 507 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 BNIP1Q12981 228 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 SETDB1Q15047 1291 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 EZH2Q15910 746 aaKnown RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 PCSK7Q16549 785 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 PROSER3Q2NL68 480 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ASTE1Q2TB18 679 aaPredicted RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 ACCSLQ4AC99 568 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 VWA3BQ502W6 1294 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 WASHC2DQ5SRD0 308 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 NUGGCQ68CJ6 796 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 IRGCQ6NXR0 463 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 NFRKBQ6P4R8 1299 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 TAOK1Q7L7X3 1001 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ARHGAP22Q7Z5H3 698 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ANKLE2Q86XL3 938 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ETFBKMTQ8IXQ9 262 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 GRAMD1CQ8IYS0 662 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 AGGF1Q8N302 714 aaeCLIP7.27□□□□□ -1.25
USP28-207ENST00000538475 ENDOVQ8N8Q3 282 aaKnown RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 FAM81AQ8TBF8 368 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 FBF1Q8TES7 1133 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 AGAP11Q8TF27 550 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 FBXO41Q8TF61 875 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 IFT81Q8WYA0 676 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 THOC1Q96FV9 657 aaKnown RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 LTV1Q96GA3 475 aaPredicted RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 ZNF570Q96NI8 536 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 AIFM3Q96NN9 605 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 TMEM237Q96Q45 408 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 NAP1L3Q99457 506 aaPredicted RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 MYD88Q99836 296 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 PHF20Q9BVI0 1012 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ROPN1BQ9BZX4 212 aaPredicted RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 CCSER1Q9C0I3 900 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 VCX3BQ9H321 246 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 SUDS3Q9H7L9 328 aaPredicted RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 ROPN1Q9HAT0 212 aaPredicted RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 VCX3AQ9NNX9 186 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 SEC31BQ9NQW1 1179 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 GJB4Q9NTQ9 266 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.27□□□□□ -1.25
USP28-207ENST00000538475 LARSQ9P2J5 1176 aaKnown RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 INTUQ9ULD6 942 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 SLC6A14Q9UN76 642 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 STARD13Q9Y3M8 1113 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 GMEB1Q9Y692 573 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 BZW2Q9Y6E2 419 aaKnown RBP7.27□□□□□ -1.25
USP28-207ENST00000538475 CAPN6Q9Y6Q1 641 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 PLCH1Q4KWH8 1693 aa7.27□□□□□ -1.25
USP28-207ENST00000538475 ADAMTSL3P82987 1691 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 A0A087X0B3 334 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 ZNF263O14978 683 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 CTNND1O60716 968 aaKnown RBP7.26□□□□□ -1.25
USP28-207ENST00000538475 DIAPH2O60879 1101 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 LILRB5O75023 590 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 SMIM24O75264 130 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 GFPT2O94808 682 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 MOCS3O95396 460 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 OAS1P00973 400 aaKnown RBP7.26□□□□□ -1.25
USP28-207ENST00000538475 SERPING1P05155 500 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 SSBP05455 408 aaKnown RBP eCLIP7.26□□□□□ -1.25
USP28-207ENST00000538475 FAM153BP0C7A2 387 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 HSPA6P17066 643 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 CALML3P27482 149 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 HPDP32754 393 aaPredicted RBP7.26□□□□□ -1.25
USP28-207ENST00000538475 CTCFP49711 727 aaPredicted RBP7.26□□□□□ -1.25
USP28-207ENST00000538475 RASSF2P50749 326 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 CLCN2P51788 898 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 NPEPPSP55786 919 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 MRPS25P82663 173 aaKnown RBP7.26□□□□□ -1.25
USP28-207ENST00000538475 FOXO4P98177 505 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 AMPD3Q01432 767 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 GRIN1Q05586 938 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 KLC1Q07866 573 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 ORC2Q13416 577 aaPredicted RBP7.26□□□□□ -1.25
USP28-207ENST00000538475 ACVR2BQ13705 512 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 LAMB3Q13751 1172 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 TAF11Q15544 211 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 MAN2A1Q16706 1144 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 TBC1D25Q3MII6 688 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 FAM153CQ494X1 144 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 SLC9C1Q4G0N8 1177 aa7.26□□□□□ -1.25
USP28-207ENST00000538475 LRRC23Q53EV4 343 aaPredicted RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms