RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 POLR3FQ9H1D9 316 aaPredicted RBP16.45■□□□□ 0.22
USP28-204ENST00000537642 NSUN3Q9H649 340 aaKnown RBP16.45■□□□□ 0.22
USP28-204ENST00000537642 CCT6AP40227 531 aaKnown RBP16.44■□□□□ 0.22
USP28-204ENST00000537642 PRPHP41219 470 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 POU5F1BQ06416 359 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 TFDP1Q14186 410 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 MAEAQ7L5Y9 396 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 IFNLR1Q8IU57 520 aaPredicted RBP16.44■□□□□ 0.22
USP28-204ENST00000537642 ABI1Q8IZP0 508 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 COLGALT1Q8NBJ5 622 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 HELQQ8TDG4 1101 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 GPRC5CQ9NQ84 441 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 FAM105AQ9NUU6 356 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 PCDHB12Q9Y5F1 795 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 TTC28Q96AY4 2481 aa16.44■□□□□ 0.22
USP28-204ENST00000537642 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.43■□□□□ 0.22
USP28-204ENST00000537642 PP2D1A8MPX8 630 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 ZNF623O75123 536 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 CSPG5O95196 566 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 SKIP12755 728 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 KCNQ1P51787 676 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 ATP2C1P98194 919 aaPredicted RBP16.43■□□□□ 0.22
USP28-204ENST00000537642 PADI6Q6TGC4 694 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 LRRC43Q8N309 656 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 SNX29Q8TEQ0 813 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 POF1BQ8WVV4 589 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 SYMPKQ92797 1274 aaKnown RBP16.43■□□□□ 0.22
USP28-204ENST00000537642 LPPQ93052 612 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 RAB34Q9BZG1 259 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 UBE2ZQ9H832 354 aaPredicted RBP16.43■□□□□ 0.22
USP28-204ENST00000537642 AAASQ9NRG9 546 aa16.43■□□□□ 0.22
USP28-204ENST00000537642 ARHGEF35A5YM69 484 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 MEIS3P2A8K0S8 358 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 TSPAN1O60635 241 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 BMP1P13497 986 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 LAG3P18627 525 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 RAB27AP51159 221 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 MBTD1Q05BQ5 628 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 AAK1Q2M2I8 961 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 LONRF3Q496Y0 759 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 UBXN11Q5T124 520 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 DTHD1Q6ZMT9 781 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 MCPH1Q8NEM0 835 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 NFKBIZQ9BYH8 718 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 KIAA1024Q9UPX6 916 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 PCDHB2Q9Y5E7 798 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 STK24Q9Y6E0 443 aa16.42■□□□□ 0.22
USP28-204ENST00000537642 INO80B-WBP1J3KQ70 363 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 FGF18O76093 207 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 ERLIN2O94905 339 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 CYP11B2P19099 503 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 CDC25AP30304 524 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 IRS1P35568 1242 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 COL19A1Q14993 1142 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 PCBP1Q15365 356 aaKnown RBP eCLIP16.41■□□□□ 0.22
USP28-204ENST00000537642 AMHR2Q16671 573 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 MRPL10Q7Z7H8 261 aaKnown RBP16.41■□□□□ 0.22
USP28-204ENST00000537642 THNSL1Q8IYQ7 743 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 BSNDQ8WZ55 320 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 MMTAG2Q9BU76 263 aaKnown RBP16.41■□□□□ 0.22
USP28-204ENST00000537642 BHMT2Q9H2M3 363 aa16.41■□□□□ 0.22
USP28-204ENST00000537642 DDX19AQ9NUU7 478 aaKnown RBP16.41■□□□□ 0.22
USP28-204ENST00000537642 LRRIQ4A6NIV6 560 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 OFD1O75665 1012 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 AXLP30530 894 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 PBX3P40426 434 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 UBE3AQ05086 875 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 HYAL1Q12794 435 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 CSPP1Q1MSJ5 1256 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 KRT79Q5XKE5 535 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 KCNT2Q6UVM3 1135 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 AGMOQ6ZNB7 445 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 BRAPQ7Z569 592 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 ADAMTS19Q8TE59 1207 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 CPB2Q96IY4 423 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 ZNF558Q96NG5 402 aa16.4■□□□□ 0.22
USP28-204ENST00000537642 MRPL9Q9BYD2 267 aaKnown RBP16.4■□□□□ 0.22
USP28-204ENST00000537642 NCOR1O75376 2440 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 VPS37CA5D8V6 355 aaPredicted RBP16.39■□□□□ 0.21
USP28-204ENST00000537642 E9PMD0 336 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 K7ELQ4 463 aaPredicted RBP16.39■□□□□ 0.21
USP28-204ENST00000537642 B4GALT5O43286 388 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 ARF4P18085 180 aaPredicted RBP16.39■□□□□ 0.21
USP28-204ENST00000537642 KCNA5P22460 613 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 GTF2F1P35269 517 aaKnown RBP eCLIP16.39■□□□□ 0.21
USP28-204ENST00000537642 PLCB3Q01970 1234 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 ARL6IP4Q66PJ3 421 aaKnown RBP16.39■□□□□ 0.21
USP28-204ENST00000537642 CDCA2Q69YH5 1023 aaPredicted RBP16.39■□□□□ 0.21
USP28-204ENST00000537642 NOTUMQ6P988 496 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 GLB1LQ6UWU2 654 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 ADGRD2Q7Z7M1 963 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 SMG8Q8ND04 991 aaKnown RBP16.39■□□□□ 0.21
USP28-204ENST00000537642 PGBD4Q96DM1 585 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 PABPC5Q96DU9 382 aaKnown RBP16.39■□□□□ 0.21
USP28-204ENST00000537642 INTS4Q96HW7 963 aaKnown RBP16.39■□□□□ 0.21
USP28-204ENST00000537642 EIF2AQ9BY44 585 aaKnown RBP16.39■□□□□ 0.21
USP28-204ENST00000537642 POLD4Q9HCU8 107 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 INPP5FQ9Y2H2 1132 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 PCDHGC5Q9Y5F6 944 aa16.39■□□□□ 0.21
USP28-204ENST00000537642 MUC3AQ02505 3323 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms