RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 M0R296 226 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 ZBTB39O15060 712 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 B4GALT3O60512 393 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 CCNT1O60563 726 aaKnown RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 CLASP2O75122 1294 aaKnown RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 ZNF623O75123 536 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 ZC3H11AO75152 810 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP28-203ENST00000537490 OFD1O75665 1012 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 CDKL5O76039 1030 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 CXCL14O95715 111 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 GALTP07902 379 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 FDPSP14324 419 aaKnown RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 GCFC2P16383 781 aaKnown RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 HOXB8P17481 243 aaPredicted RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 ALDH7A1P49419 539 aaKnown RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 SMC1AQ14683 1233 aaKnown RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 NOMO2Q5JPE7 1267 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 AGMOQ6ZNB7 445 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 BMP8AQ7Z5Y6 402 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 C4orf19Q8IY42 314 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 VPS52Q8N1B4 723 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 BCL7CQ8WUZ0 217 aaPredicted RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 PRPF31Q8WWY3 499 aaKnown RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 AUTS2Q8WXX7 1259 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 CASP10Q92851 521 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 TMEM143Q96AN5 459 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 DYDC2Q96IM9 177 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 CEP170P1Q96L14 293 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 MFSD14AQ96MC6 490 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 JPH2Q9BR39 696 aaPredicted RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 DHX33Q9H6R0 707 aaKnown RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 MINDY3Q9H8M7 445 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 BMP2KQ9NSY1 1161 aaPredicted RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 TBC1D13Q9NVG8 400 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 ORC3Q9UBD5 711 aaPredicted RBP9.47□□□□□ -0.89
USP28-203ENST00000537490 INPP5FQ9Y2H2 1132 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 COL4A3BPQ9Y5P4 624 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 STK36Q9NRP7 1315 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 TBX3O15119 743 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 MARCH6O60337 910 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 DKC1O60832 514 aaKnown RBP eCLIP9.46□□□□□ -0.9
USP28-203ENST00000537490 SRGAP2CP0DJJ0 459 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 SRGAP2BP0DMP2 458 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 SKIP12755 728 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 XBP1P17861 261 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 SP100P23497 879 aaPredicted RBP9.46□□□□□ -0.9
USP28-203ENST00000537490 HOXA11P31270 313 aaPredicted RBP9.46□□□□□ -0.9
USP28-203ENST00000537490 YWHABP31946 246 aaKnown RBP9.46□□□□□ -0.9
USP28-203ENST00000537490 CA8P35219 290 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 SLC11A1P49279 550 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 AFF1P51825 1210 aaKnown RBP9.46□□□□□ -0.9
USP28-203ENST00000537490 POLGP54098 1239 aaPredicted RBP9.46□□□□□ -0.9
USP28-203ENST00000537490 AK2P54819 239 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 NHLH1Q02575 133 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 SPIRE1Q08AE8 756 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 NR5A1Q13285 461 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 CTTNQ14247 550 aaKnown RBP9.46□□□□□ -0.9
USP28-203ENST00000537490 UBXN11Q5T124 520 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 IER5LQ5T953 404 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 NCAPH2Q6IBW4 605 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 KANK3Q6NY19 840 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 GLB1LQ6UWU2 654 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 SRGAP1Q7Z6B7 1085 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 MRPL10Q7Z7H8 261 aaKnown RBP9.46□□□□□ -0.9
USP28-203ENST00000537490 ZNF280BQ86YH2 543 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 C12orf76Q8N812 135 aaPredicted RBP9.46□□□□□ -0.9
USP28-203ENST00000537490 NECAB1Q8N987 351 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 SLC7A3Q8WY07 619 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 PBXIP1Q96AQ6 731 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 TMEM169Q96HH4 297 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 IGSF21Q96ID5 467 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 LXNQ9BS40 222 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 GBP3Q9H0R5 595 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 ZBP1Q9H171 429 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 KCNH6Q9H252 994 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 AGPAT5Q9NUQ2 364 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 DNAJB4Q9UDY4 337 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 PCDHB2Q9Y5E7 798 aa9.46□□□□□ -0.9
USP28-203ENST00000537490 WDR81Q562E7 1941 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 DDHD2O94830 711 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 SLITRK3O94933 977 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 LARGE1O95461 756 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 WEE2P0C1S8 567 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 CTSAP10619 480 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 EPCAMP16422 314 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 RFC5P40937 340 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 RAB27AP51159 221 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 CYP4A11Q02928 519 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 RNASELQ05823 741 aaKnown RBP9.45□□□□□ -0.9
USP28-203ENST00000537490 SIGLEC14Q08ET2 396 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 LAMTOR4Q0VGL1 99 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 ME3Q16798 604 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 TPRNQ4KMQ1 711 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 XKR9Q5GH70 373 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 OTUD6AQ7L8S5 288 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 DDX53Q86TM3 631 aaKnown RBP9.45□□□□□ -0.9
USP28-203ENST00000537490 FERMT3Q86UX7 667 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 TPH2Q8IWU9 490 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 FEZF2Q8TBJ5 459 aa9.45□□□□□ -0.9
USP28-203ENST00000537490 SLC22A17Q8WUG5 538 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms