RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PPP6R2O75170 966 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 TAF5LO75529 589 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 WDHD1O75717 1129 aaPredicted RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 KCNH1O95259 989 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 TGFB1P01137 390 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 ATP5JP18859 108 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 SYKP43405 635 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 TRIM14Q14142 442 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 DPCR1Q3MIW9 517 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 ZC3H12BQ5HYM0 836 aaKnown RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 BEND6Q5SZJ8 279 aaPredicted RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 BEND3Q5T5X7 828 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 WDR93Q6P2C0 686 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 SPATC1Q76KD6 591 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 CNGA4Q8IV77 575 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 CCDC50Q8IVM0 306 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 SPACA3Q8IXA5 215 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 FBXL16Q8N461 479 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 DAGLBQ8NCG7 672 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 LINC00301Q8NCQ3 95 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 NSUN7Q8NE18 718 aaKnown RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 ZSWIM2Q8NEG5 633 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 THAP3Q8WTV1 239 aaPredicted RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 STAG1Q8WVM7 1258 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 CRACR2AQ9BSW2 395 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 PDE11AQ9HCR9 933 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 HELLSQ9NRZ9 838 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 RBM28Q9NW13 759 aaKnown RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 CGGBP1Q9UFW8 167 aaPredicted RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 ZC3H7BQ9UGR2 993 aaKnown RBP7.34□□□□□ -1.23
USP28-202ENST00000535607 DUSP13Q9UII6 198 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 TUBE1Q9UJT0 475 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 L1RE1Q9UN81 338 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 CEP83Q9Y592 693 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 UBR3Q6ZT12 1888 aa7.34□□□□□ -1.23
USP28-202ENST00000535607 TRAV20A0A0B4J274 112 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 A0A1B0GVL5 298 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 TARSL2A2RTX5 802 aaKnown RBP7.33□□□□□ -1.24
USP28-202ENST00000535607 CPLX1O14810 134 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 OPA1O60313 960 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 JAK2O60674 1132 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 ARHGAP25P42331 645 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 CRKLP46109 303 aaKnown RBP7.33□□□□□ -1.24
USP28-202ENST00000535607 AARSP49588 968 aaKnown RBP eCLIP7.33□□□□□ -1.24
USP28-202ENST00000535607 MNAT1P51948 309 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 NDUFA8P51970 172 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 NEXNQ0ZGT2 675 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 SCRN1Q12765 414 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 GRB10Q13322 594 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 ITPK1Q13572 414 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 TRIM29Q14134 588 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 CASP8Q14790 479 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 NKPD1Q17RQ9 610 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 PROSER3Q2NL68 480 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 ANO1Q5XXA6 986 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 KSR2Q6VAB6 950 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 KIF6Q6ZMV9 814 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 TMPRSS7Q7RTY8 843 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 TMTC1Q8IUR5 882 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 CNNM3Q8NE01 707 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 PLBD2Q8NHP8 589 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 FAM76AQ8TAV0 307 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 SH3TC2Q8TF17 1288 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 FAM227BQ96M60 508 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 NAPGQ99747 312 aaPredicted RBP7.33□□□□□ -1.24
USP28-202ENST00000535607 AARSD1Q9BTE6 412 aaKnown RBP7.33□□□□□ -1.24
USP28-202ENST00000535607 ZCCHC17Q9NP64 241 aaKnown RBP7.33□□□□□ -1.24
USP28-202ENST00000535607 A1CFQ9NQ94 594 aaKnown RBP7.33□□□□□ -1.24
USP28-202ENST00000535607 BSDC1Q9NW68 430 aaPredicted RBP7.33□□□□□ -1.24
USP28-202ENST00000535607 DONSONQ9NYP3 566 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 APEX2Q9UBZ4 518 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 ANGEL1Q9UNK9 670 aaKnown RBP7.33□□□□□ -1.24
USP28-202ENST00000535607 ZBTB1Q9Y2K1 713 aa7.33□□□□□ -1.24
USP28-202ENST00000535607 MYH14Q7Z406 1995 aaKnown RBP7.33□□□□□ -1.24
USP28-202ENST00000535607 COL24A1Q17RW2 1714 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 ERVV-1B6SEH8 477 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 GOLGA8KD6RF30 607 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 SHOXO15266 292 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 ITGAVP06756 1048 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 GSCP56915 257 aaPredicted RBP7.32□□□□□ -1.24
USP28-202ENST00000535607 TBX2Q13207 712 aaPredicted RBP7.32□□□□□ -1.24
USP28-202ENST00000535607 IKZF1Q13422 519 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 AOC3Q16853 763 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 C2orf27AQ580R0 203 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 HSP90AB3PQ58FF7 597 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 TSPYL5Q86VY4 417 aaPredicted RBP7.32□□□□□ -1.24
USP28-202ENST00000535607 ZNF227Q86WZ6 799 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 CREG2Q8IUH2 290 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 KSR1Q8IVT5 923 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 FAM177A1Q8N128 213 aaPredicted RBP7.32□□□□□ -1.24
USP28-202ENST00000535607 GPATCH11Q8N954 259 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 LINC00116Q8NCU8 138 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 WASF1Q92558 559 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 APPBP2Q92624 585 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 DHX58Q96C10 678 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 AGXT2Q9BYV1 514 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 FAM204AQ9H8W3 233 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 RAI14Q9P0K7 980 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 FAN1Q9Y2M0 1017 aa7.32□□□□□ -1.24
USP28-202ENST00000535607 ST14Q9Y5Y6 855 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms