RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 TCF25Q9BQ70 676 aa18.08■□□□□ 0.48
CLSTN3-204ENST00000535313 IFT122Q9HBG6 1241 aa18.08■□□□□ 0.48
CLSTN3-204ENST00000535313 NGRNQ9NPE2 291 aaKnown RBP18.08■□□□□ 0.48
CLSTN3-204ENST00000535313 BMP2KQ9NSY1 1161 aaPredicted RBP18.08■□□□□ 0.48
CLSTN3-204ENST00000535313 FAM105AQ9NUU6 356 aa18.08■□□□□ 0.48
CLSTN3-204ENST00000535313 RAPGEFL1Q9UHV5 662 aa18.08■□□□□ 0.48
CLSTN3-204ENST00000535313 BARX2Q9UMQ3 279 aaPredicted RBP18.08■□□□□ 0.48
CLSTN3-204ENST00000535313 C19orf67A6NJJ6 358 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 ASAP2O43150 1006 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 NEMFO60524 1076 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 GLP2RO95838 553 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 SRGAP2BP0DMP2 458 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 ALDH7A1P49419 539 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 RAB27AP51159 221 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 LAMTOR4Q0VGL1 99 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 SAFBQ15424 915 aaKnown RBP eCLIP18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 GLB1LQ6UWU2 654 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 SRGAP1Q7Z6B7 1085 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 SMRP1Q8NCR6 262 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 EIF2AK1Q9BQI3 630 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 TTC12Q9H892 705 aaPredicted RBP18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 LIMCH1Q9UPQ0 1083 aa18.07■□□□□ 0.48
CLSTN3-204ENST00000535313 CARNS1A5YM72 827 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 FAM86C2PA6NEL3 165 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 DCXO43602 365 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 SLITRK3O94933 977 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 TXKP42681 527 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 BMS1Q14692 1282 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 LONRF3Q496Y0 759 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 TMC7Q7Z402 723 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 SLC39A11Q8N1S5 342 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 LPPQ93052 612 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 PGBD4Q96DM1 585 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 CCDC43Q96MW1 224 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 MTRQ99707 1265 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 AGPAT5Q9NUQ2 364 aa18.06■□□□□ 0.48
CLSTN3-204ENST00000535313 C5orf42Q9H799 3197 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 ZBTB39O15060 712 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 ZNF623O75123 536 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 BCAR1P56945 870 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 FERMT3Q86UX7 667 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 RNF149Q8NC42 400 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 TMEM169Q96HH4 297 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 HSD17B14Q9BPX1 270 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 C11orf16Q9NQ32 467 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 INPP5FQ9Y2H2 1132 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 HCN4Q9Y3Q4 1203 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 PCDHB2Q9Y5E7 798 aa18.05■□□□□ 0.48
CLSTN3-204ENST00000535313 ZC3H11AO75152 810 aaKnown RBP eCLIP18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 LYPLA2O95372 231 aa18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 ATP2B1P20020 1258 aa18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 RNASELQ05823 741 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 ST3GAL1Q11201 340 aa18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 MXD4Q14582 209 aaPredicted RBP18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 SMC1AQ14683 1233 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 NOMO2Q5JPE7 1267 aa18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 CCDC83Q8IWF9 413 aa18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 C8orf76Q96K31 380 aa18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 ANKEF1Q9NU02 776 aa18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 USP15Q9Y4E8 981 aaPredicted RBP18.04■□□□□ 0.48
CLSTN3-204ENST00000535313 HIDE1A8MVS5 230 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 NT5C1B-RDH14C9J2C7 533 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 OFD1O75665 1012 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 DGAT1O75907 488 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 ERLIN2O94905 339 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 CA8P35219 290 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 RBM10P98175 930 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 GUCY1B3Q02153 619 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 TFDP1Q14186 410 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 PCBP1Q15365 356 aaKnown RBP eCLIP18.03■□□□□ 0.485e-10■■■■■ 28.2
CLSTN3-204ENST00000535313 VN1R2Q8NFZ6 395 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 URGCPQ8TCY9 931 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 MTMR9Q96QG7 549 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 LLPHQ9BRT6 129 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 MINDY3Q9H8M7 445 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 TBC1D13Q9NVG8 400 aa18.03■□□□□ 0.48
CLSTN3-204ENST00000535313 MEIS3P2A8K0S8 358 aa18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 PRR33A8MZF0 331 aa18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 WNT7AO00755 349 aa18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 MCM7P33993 719 aa18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 TECP42680 631 aa18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 NCBP1Q09161 790 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 LLGL2Q6P1M3 1020 aa18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 TMEM184AQ6ZMB5 413 aa18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 MRPL43Q8N983 215 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 TMEM87AQ8NBN3 555 aa18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 ZSCAN31Q96LW9 406 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 XPNPEP1Q9NQW7 623 aa18.02■□□□□ 0.48
CLSTN3-204ENST00000535313 CNTNAP2Q9UHC6 1331 aa18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 C2orf71A6NGG8 1288 aa18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 HOXA11P31270 313 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 PTENP60484 403 aa18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 HMGN5P82970 282 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 ANKRD54Q6NXT1 300 aa18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 MRPL10Q7Z7H8 261 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 RNF135Q8IUD6 432 aa18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 VPS52Q8N1B4 723 aa18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 CNNM3Q8NE01 707 aa18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 PHF7Q9BWX1 381 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-204ENST00000535313 GBP3Q9H0R5 595 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms