RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 CLIP3Q96DZ5 547 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 C12orf65Q9H3J6 166 aaKnown RBP4.93□□□□□ -1.62
USP48-215ENST00000534705 ZMAT4Q9H898 229 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 PARPBPQ9NWS1 579 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 PTPN22Q9Y2R2 807 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 REXO2Q9Y3B8 237 aaKnown RBP4.93□□□□□ -1.62
USP48-215ENST00000534705 PRKAB1Q9Y478 270 aa4.93□□□□□ -1.62
USP48-215ENST00000534705 ABCA10Q8WWZ4 1543 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 PMS2P1A4D2B8 440 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 FOXN1O15353 648 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 MAFGO15525 162 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 BPIP17213 487 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 SOX5P35711 763 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 ADCY8P40145 1251 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 KCNQ1P51787 676 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 SESN2P58004 480 aaPredicted RBP4.92□□□□□ -1.62
USP48-215ENST00000534705 SMAD3P84022 425 aaKnown RBP4.92□□□□□ -1.62
USP48-215ENST00000534705 C11orf74Q86VG3 221 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 NXPE1Q8N323 547 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 OR5AN1Q8NGI8 311 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 RPGRQ92834 1020 aaKnown RBP4.92□□□□□ -1.62
USP48-215ENST00000534705 ERCC4Q92889 916 aaPredicted RBP4.92□□□□□ -1.62
USP48-215ENST00000534705 LPPQ93052 612 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 DPYSL5Q9BPU6 564 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 PLA2G12BQ9BX93 195 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 PITHD1Q9GZP4 211 aaPredicted RBP4.92□□□□□ -1.62
USP48-215ENST00000534705 HAPLN2Q9GZV7 340 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 TLR9Q9NR96 1032 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 TOMM22Q9NS69 142 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 THG1LQ9NWX6 298 aaKnown RBP4.92□□□□□ -1.62
USP48-215ENST00000534705 KCMF1Q9P0J7 381 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 NR2E1Q9Y466 385 aa4.92□□□□□ -1.62
USP48-215ENST00000534705 AQRO60306 1485 aaKnown RBP eCLIP4.92□□□□□ -1.622e-7■■□□□ 12
USP48-215ENST00000534705 SOGA1O94964 1423 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 RIMBP3CA6NJZ7 1639 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 RIMBP3BA6NNM3 1639 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 RIMBP3Q9UFD9 1639 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 CYP27B1O15528 508 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 TGM5O43548 720 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 VIL1P09327 827 aaKnown RBP4.91□□□□□ -1.62
USP48-215ENST00000534705 BMP5P22003 454 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 ADCYAP1R1P41586 468 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 RGS3P49796 1198 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 MEOX1P50221 254 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 DUSP8Q13202 625 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 MYBPC3Q14896 1274 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 DGKDQ16760 1214 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 KIAA1841Q6NSI8 718 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 TIGD7Q6NT04 549 aaPredicted RBP4.91□□□□□ -1.62
USP48-215ENST00000534705 BMP8AQ7Z5Y6 402 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 BCL6BQ8N143 479 aaPredicted RBP4.91□□□□□ -1.62
USP48-215ENST00000534705 THEMISQ8N1K5 641 aaPredicted RBP4.91□□□□□ -1.62
USP48-215ENST00000534705 ZNF610Q8N9Z0 462 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 TTPALQ9BTX7 342 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 OR10A2Q9H208 303 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 NELFAQ9H3P2 528 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 CAAP1Q9H8G2 361 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 H2AFY2Q9P0M6 372 aaPredicted RBP4.91□□□□□ -1.62
USP48-215ENST00000534705 PUF60Q9UHX1 559 aaKnown RBP4.91□□□□□ -1.62
USP48-215ENST00000534705 GIT1Q9Y2X7 761 aa4.91□□□□□ -1.62
USP48-215ENST00000534705 WRNQ14191 1432 aaPredicted RBP eCLIP4.9□□□□□ -1.62
USP48-215ENST00000534705 ARHGAP6O43182 974 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 ZEB2O60315 1214 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 FKBP9O95302 570 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 LSP1P33241 339 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 IL2P60568 153 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 FOXL1Q12952 345 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 TERF2Q15554 542 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 PRAMEF9Q5VWM5 478 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 EGFLAMQ63HQ2 1017 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 USP30Q70CQ3 517 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 LARP4Q71RC2 724 aaKnown RBP eCLIP4.9□□□□□ -1.63
USP48-215ENST00000534705 FKBP9P1Q75LS8 142 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 ADGRE4PQ86SQ3 457 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 SGMS1Q86VZ5 419 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 TMPRSS6Q8IU80 811 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 RTKN2Q8IZC4 609 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 CHAC2Q8WUX2 184 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 TUBGCP5Q96RT8 1024 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 WNT8AQ9H1J5 351 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 SAE1Q9UBE0 346 aaPredicted RBP4.9□□□□□ -1.63
USP48-215ENST00000534705 APOBEC2Q9Y235 224 aaKnown RBP4.9□□□□□ -1.63
USP48-215ENST00000534705 CLASP1Q7Z460 1538 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 ADAMTS12P58397 1594 aa4.9□□□□□ -1.63
USP48-215ENST00000534705 SNAPC4Q5SXM2 1469 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 MSX2P35548 267 aaPredicted RBP4.89□□□□□ -1.63
USP48-215ENST00000534705 IL12RB1P42701 662 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 MASP1P48740 699 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 MRE11P49959 708 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 ADCY2Q08462 1091 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 PCOLCEQ15113 449 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 KLHDC10Q6PID8 442 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 DDX46Q7L014 1031 aaKnown RBP4.89□□□□□ -1.63
USP48-215ENST00000534705 KRT26Q7Z3Y9 468 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 FILIP1Q7Z7B0 1213 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 LEO1Q8WVC0 666 aaPredicted RBP4.89□□□□□ -1.63
USP48-215ENST00000534705 RTF1Q92541 710 aaKnown RBP4.89□□□□□ -1.63
USP48-215ENST00000534705 GFM2Q969S9 779 aaKnown RBP4.89□□□□□ -1.63
USP48-215ENST00000534705 KIAA1683Q9H0B3 1180 aa4.89□□□□□ -1.63
USP48-215ENST00000534705 IFT22Q9H7X7 185 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms