RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 AMHR2Q16671 573 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 ARSHQ5FYA8 562 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 ECHDC2Q86YB7 292 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 DAW1Q8N136 415 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 PRDM12Q9H4Q4 367 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 CERS4Q9HA82 394 aa21.99■■□□□ 1.11
CPSF1-209ENST00000532725 PIN4Q9Y237 131 aaKnown RBP21.99■■□□□ 1.11
CPSF1-209ENST00000532725 LRRIQ4A6NIV6 560 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 INO80B-WBP1J3KQ70 363 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 HIP1RO75146 1068 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 SSBP05455 408 aaKnown RBP eCLIP21.98■■□□□ 1.11
CPSF1-209ENST00000532725 GUCY2CP25092 1073 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 DDIT3P35638 169 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 NAMPTP43490 491 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 MAPK7Q13164 816 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 CDCA2Q69YH5 1023 aaPredicted RBP21.98■■□□□ 1.11
CPSF1-209ENST00000532725 ZNF598Q86UK7 904 aaKnown RBP21.98■■□□□ 1.11
CPSF1-209ENST00000532725 RAD54LQ92698 747 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 TGS1Q96RS0 853 aaKnown RBP21.98■■□□□ 1.11
CPSF1-209ENST00000532725 TIPINQ9BVW5 301 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 FZD8Q9H461 694 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 KCND2Q9NZV8 630 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 RCOR1Q9UKL0 485 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 CFAP45Q9UL16 551 aa21.98■■□□□ 1.11
CPSF1-209ENST00000532725 EPOPA6NHQ4 379 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 TSPAN1O60635 241 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 ZNF623O75123 536 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 EOMESO95936 686 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 LINC00271P0C7V0 271 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 IBSPP21815 317 aaPredicted RBP21.97■■□□□ 1.11
CPSF1-209ENST00000532725 GATMP50440 423 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 PPP2R5AQ15172 486 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 AXDND1Q5T1B0 1012 aaPredicted RBP21.97■■□□□ 1.11
CPSF1-209ENST00000532725 MYLIPQ8WY64 445 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 IFT74Q96LB3 600 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 CCDC39Q9UFE4 941 aa21.97■■□□□ 1.11
CPSF1-209ENST00000532725 SFI1A8K8P3 1242 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 ERLIN2O94905 339 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 ATF7P17544 494 aaPredicted RBP21.96■■□□□ 1.11
CPSF1-209ENST00000532725 AXLP30530 894 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 BTG3Q14201 252 aaPredicted RBP21.96■■□□□ 1.11
CPSF1-209ENST00000532725 MCM6Q14566 821 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 UBXN11Q5T124 520 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 TWF2Q6IBS0 349 aaKnown RBP21.96■■□□□ 1.11
CPSF1-209ENST00000532725 CMTR2Q8IYT2 770 aaKnown RBP21.96■■□□□ 1.11
CPSF1-209ENST00000532725 FIBCD1Q8N539 461 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 RASSF8Q8NHQ8 419 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 ARNTL2Q8WYA1 636 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 C17orf80Q9BSJ5 609 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 C2orf40Q9H1Z8 148 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 RNF19AQ9NV58 838 aa21.96■■□□□ 1.11
CPSF1-209ENST00000532725 NPHP3-ACAD11A0A0J9YXS1 232 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 RFXAPO00287 272 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 CUTAO60888 179 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 NPTX2P47972 431 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 RAD51AP2Q09MP3 1159 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 ADGRE1Q14246 886 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 FAM187BQ17R55 369 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 NAALADL2Q58DX5 795 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 PPP4R3CPQ6ZMV5 832 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 KCNG4Q8TDN1 519 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 CLP1Q92989 425 aaKnown RBP21.95■■□□□ 1.1
CPSF1-209ENST00000532725 DRC1Q96MC2 740 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 NTPCRQ9BSD7 190 aaKnown RBP21.95■■□□□ 1.1
CPSF1-209ENST00000532725 PANK2Q9BZ23 570 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 C17orf75Q9HAS0 396 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 FAM105AQ9NUU6 356 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 STXBP5LQ9Y2K9 1186 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 MYH15Q9Y2K3 1946 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 ADGRA3Q8IWK6 1321 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 COL4A6Q14031 1691 aa21.95■■□□□ 1.1
CPSF1-209ENST00000532725 B4GALT5O43286 388 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 FGFR1P11362 822 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 SKIP12755 728 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 ARF4P18085 180 aaPredicted RBP21.94■■□□□ 1.1
CPSF1-209ENST00000532725 TXLNAP40222 546 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 PEX3P56589 373 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 NCBP1Q09161 790 aaKnown RBP21.94■■□□□ 1.1
CPSF1-209ENST00000532725 DHX8Q14562 1220 aaKnown RBP21.94■■□□□ 1.1
CPSF1-209ENST00000532725 RRAGBQ5VZM2 374 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 MRPL10Q7Z7H8 261 aaKnown RBP21.94■■□□□ 1.1
CPSF1-209ENST00000532725 ZBTB8OSQ8IWT0 167 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 DEPTORQ8TB45 409 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 LARP4BQ92615 738 aaKnown RBP21.94■■□□□ 1.1
CPSF1-209ENST00000532725 CPB2Q96IY4 423 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 CHAMP1Q96JM3 812 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 PRIMPOLQ96LW4 560 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 CASD1Q96PB1 797 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 KIFC3Q9BVG8 833 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 CCDC113Q9H0I3 377 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 PRMT7Q9NVM4 692 aaPredicted RBP21.94■■□□□ 1.1
CPSF1-209ENST00000532725 PCDHA7Q9UN72 937 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 PCDHB2Q9Y5E7 798 aa21.94■■□□□ 1.1
CPSF1-209ENST00000532725 A0A087X0B3 334 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 A0A1B0GUA9 196 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 TBKBP1A7MCY6 615 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 RAB27AP51159 221 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 EFNA5P52803 228 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 EPC2Q52LR7 807 aa21.93■■□□□ 1.1
CPSF1-209ENST00000532725 NOTUMQ6P988 496 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms