RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RTKN2Q8IZC4 609 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 FUKQ8N0W3 1084 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 IGSF22Q8N9C0 903 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 SLC16A11Q8NCK7 471 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 CALML6Q8TD86 181 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 EDAQ92838 391 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 ADOQ96SZ5 270 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 ZNF747Q9BV97 191 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 KIAA1683Q9H0B3 1180 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 C12orf65Q9H3J6 166 aaKnown RBP5.57□□□□□ -1.52
CD44-235ENST00000532339 TRIM39Q9HCM9 518 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 PUF60Q9UHX1 559 aaKnown RBP5.57□□□□□ -1.52
CD44-235ENST00000532339 CDC42EP3Q9UKI2 254 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 ADGRB2O60241 1585 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 DLC1Q96QB1 1528 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 ATP10DQ9P241 1426 aa5.57□□□□□ -1.52
CD44-235ENST00000532339 B4E1Z4 1266 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 PLD2O14939 933 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 RPS19P39019 145 aaKnown RBP5.56□□□□□ -1.52
CD44-235ENST00000532339 IRF9Q00978 393 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 PCOLCEQ15113 449 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 NFE2L2Q16236 605 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 GPR162Q16538 588 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 ARHGAP44Q17R89 818 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 ABHD17CQ6PCB6 329 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 POLNQ7Z5Q5 900 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 DDX17Q92841 729 aaKnown RBP5.56□□□□□ -1.52
CD44-235ENST00000532339 DNAJC2Q99543 621 aaKnown RBP5.56□□□□□ -1.52
CD44-235ENST00000532339 DPYSL5Q9BPU6 564 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 BOCQ9BWV1 1114 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 OR10A2Q9H208 303 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 SLC30A1Q9Y6M5 507 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 SYCP2Q9BX26 1530 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 MYOM2P54296 1465 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 MST1RQ04912 1400 aa5.56□□□□□ -1.52
CD44-235ENST00000532339 SLIT2O94813 1529 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 RASSF10A6NK89 507 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 GOLGA6L22H0YM25 854 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 MATN2O00339 956 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 FZD7O75084 574 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 MAFO75444 373 aaPredicted RBP5.55□□□□□ -1.52
CD44-235ENST00000532339 APEX1P27695 318 aaKnown RBP5.55□□□□□ -1.52
CD44-235ENST00000532339 MRE11P49959 708 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 MAP3K12Q12852 859 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 VPS72Q15906 364 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 TBR1Q16650 682 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 CC2D1AQ6P1N0 951 aaPredicted RBP5.55□□□□□ -1.52
CD44-235ENST00000532339 USP51Q70EK9 711 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 OTOP1Q7RTM1 612 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 FILIP1Q7Z7B0 1213 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 DDX53Q86TM3 631 aaKnown RBP5.55□□□□□ -1.52
CD44-235ENST00000532339 LILRB2Q8N423 598 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 OR14A2Q96R54 314 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 PRXQ9BXM0 1461 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 KIAA1107Q9UPP5 1409 aa5.55□□□□□ -1.52
CD44-235ENST00000532339 TNS1Q9HBL0 1735 aaKnown RBP5.54□□□□□ -1.52
CD44-235ENST00000532339 MYOM1P52179 1685 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 AMHP03971 560 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 ZBTB48P10074 688 aaPredicted RBP5.54□□□□□ -1.52
CD44-235ENST00000532339 DUSP8Q13202 625 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 FNDC3BQ53EP0 1204 aaKnown RBP5.54□□□□□ -1.52
CD44-235ENST00000532339 CATSPEREQ5SY80 951 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 Q8N1X5 172 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 CFHR4Q92496 578 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 E2F7Q96AV8 911 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 FAM89AQ96GI7 184 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 PLA2G12BQ9BX93 195 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 COL22A1Q8NFW1 1626 aaPredicted RBP5.54□□□□□ -1.52
CD44-235ENST00000532339 FMN1Q68DA7 1419 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 MAP3K5Q99683 1374 aa5.54□□□□□ -1.52
CD44-235ENST00000532339 CHD2O14647 1828 aaKnown RBP5.53□□□□□ -1.52
CD44-235ENST00000532339 CYR61O00622 381 aa5.53□□□□□ -1.52
CD44-235ENST00000532339 ACO1P21399 889 aaKnown RBP5.53□□□□□ -1.52
CD44-235ENST00000532339 IGFALSP35858 605 aa5.53□□□□□ -1.52
CD44-235ENST00000532339 FNTBP49356 437 aa5.53□□□□□ -1.52
CD44-235ENST00000532339 ALDH6A1Q02252 535 aaKnown RBP5.53□□□□□ -1.52
CD44-235ENST00000532339 ZCCHC8Q6NZY4 707 aaKnown RBP5.53□□□□□ -1.52
CD44-235ENST00000532339 ERCC4Q92889 916 aaPredicted RBP5.53□□□□□ -1.52
CD44-235ENST00000532339 FOXB1Q99853 325 aa5.53□□□□□ -1.52
CD44-235ENST00000532339 NELFAQ9H3P2 528 aa5.53□□□□□ -1.52
CD44-235ENST00000532339 SAMD15Q9P1V8 674 aa5.53□□□□□ -1.52
CD44-235ENST00000532339 FAM184BQ9ULE4 1060 aa5.53□□□□□ -1.52
CD44-235ENST00000532339 RREB1Q92766 1687 aa5.53□□□□□ -1.52
CD44-235ENST00000532339 RPRD2Q5VT52 1461 aaKnown RBP5.52□□□□□ -1.53
CD44-235ENST00000532339 PLEKHH2Q8IVE3 1493 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 NUP188Q5SRE5 1749 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 M0R2C6 588 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 KRT37O76014 449 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 ASLP04424 464 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 ACVRL1P37023 503 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 MECP2P51608 486 aaKnown RBP5.52□□□□□ -1.53
CD44-235ENST00000532339 STAT5BP51692 787 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 BMS1Q14692 1282 aaKnown RBP5.52□□□□□ -1.53
CD44-235ENST00000532339 NRN1LQ496H8 165 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 RNF207Q6ZRF8 634 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 Q6ZSN1 163 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 RTN4RL1Q86UN2 441 aaPredicted RBP5.52□□□□□ -1.53
CD44-235ENST00000532339 CHST14Q8NCH0 376 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 OR14K1Q8NGZ2 314 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 FOXRED1Q96CU9 486 aaPredicted RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms