RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 COL4A3BPQ9Y5P4 624 aa17.66■□□□□ 0.42
CPSF1-205ENST00000531042 ZNF623O75123 536 aa17.65■□□□□ 0.42
CPSF1-205ENST00000531042 YWHABP31946 246 aaKnown RBP17.65■□□□□ 0.42
CPSF1-205ENST00000531042 POLGP54098 1239 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-205ENST00000531042 BCAR1P56945 870 aa17.65■□□□□ 0.42
CPSF1-205ENST00000531042 HERC4Q5GLZ8 1057 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-205ENST00000531042 OTUD6AQ7L8S5 288 aa17.65■□□□□ 0.42
CPSF1-205ENST00000531042 LPPQ93052 612 aa17.65■□□□□ 0.42
CPSF1-205ENST00000531042 TMEM143Q96AN5 459 aa17.65■□□□□ 0.42
CPSF1-205ENST00000531042 DYDC2Q96IM9 177 aa17.65■□□□□ 0.42
CPSF1-205ENST00000531042 ZSWIM4Q9H7M6 989 aa17.65■□□□□ 0.42
CPSF1-205ENST00000531042 MUTYHQ9UIF7 546 aa17.65■□□□□ 0.42
CPSF1-205ENST00000531042 ARID2Q68CP9 1835 aa17.65■□□□□ 0.42
CPSF1-205ENST00000531042 LOC730098B7Z3J9 87 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 NT5C1B-RDH14C9J2C7 533 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 SRGAP2CP0DJJ0 459 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 SRGAP2BP0DMP2 458 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 ALDH7A1P49419 539 aaKnown RBP17.64■□□□□ 0.41
CPSF1-205ENST00000531042 RAB27AP51159 221 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 LAMTOR4Q0VGL1 99 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 CTTNQ14247 550 aaKnown RBP17.64■□□□□ 0.41
CPSF1-205ENST00000531042 LONRF3Q496Y0 759 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 ANKRD54Q6NXT1 300 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 SRGAP1Q7Z6B7 1085 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 NSUN7Q8NE18 718 aaKnown RBP17.64■□□□□ 0.41
CPSF1-205ENST00000531042 PSPC1Q8WXF1 523 aaKnown RBP17.64■□□□□ 0.41
CPSF1-205ENST00000531042 SUSD6Q92537 303 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 PHF7Q9BWX1 381 aaPredicted RBP17.64■□□□□ 0.41
CPSF1-205ENST00000531042 AGPAT5Q9NUQ2 364 aa17.64■□□□□ 0.41
CPSF1-205ENST00000531042 MEIS3P2A8K0S8 358 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 ZBTB39O15060 712 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 GAS2O43903 313 aaKnown RBP17.63■□□□□ 0.41
CPSF1-205ENST00000531042 OFD1O75665 1012 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 SLITRK3O94933 977 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 TECP42680 631 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 NEK4P51957 841 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 CYP4A11Q02928 519 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 SMC1AQ14683 1233 aaKnown RBP17.63■□□□□ 0.41
CPSF1-205ENST00000531042 CBX2Q14781 532 aaPredicted RBP17.63■□□□□ 0.41
CPSF1-205ENST00000531042 XKR9Q5GH70 373 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 LLGL2Q6P1M3 1020 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 GLB1LQ6UWU2 654 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 MRPL43Q8N983 215 aaKnown RBP17.63■□□□□ 0.41
CPSF1-205ENST00000531042 TCP11Q8WWU5 503 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 S1PR5Q9H228 398 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 MINDY3Q9H8M7 445 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 BMP2KQ9NSY1 1161 aaPredicted RBP17.63■□□□□ 0.41
CPSF1-205ENST00000531042 TBC1D13Q9NVG8 400 aa17.63■□□□□ 0.41
CPSF1-205ENST00000531042 C2orf71A6NGG8 1288 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 BTBD18B2RXH4 712 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 ASAP2O43150 1006 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 JAK2O60674 1132 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 EIF5BO60841 1220 aaKnown RBP17.62■□□□□ 0.41
CPSF1-205ENST00000531042 ZC3H11AO75152 810 aaKnown RBP eCLIP17.62■□□□□ 0.41
CPSF1-205ENST00000531042 EMC2Q15006 297 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 NOMO2Q5JPE7 1267 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 SYCE2Q6PIF2 218 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 TPH2Q8IWU9 490 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 PGBD4Q96DM1 585 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 TMEM169Q96HH4 297 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 EIF2AK1Q9BQI3 630 aaKnown RBP17.62■□□□□ 0.41
CPSF1-205ENST00000531042 NRDE2Q9H7Z3 1164 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 PCDHA12Q9UN75 941 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 PCDHB2Q9Y5E7 798 aa17.62■□□□□ 0.41
CPSF1-205ENST00000531042 CARNS1A5YM72 827 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 HOXB8P17481 243 aaPredicted RBP17.61■□□□□ 0.41
CPSF1-205ENST00000531042 HOXA11P31270 313 aaPredicted RBP17.61■□□□□ 0.41
CPSF1-205ENST00000531042 CALCRLQ16602 461 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 AGMOQ6ZNB7 445 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 MRPL10Q7Z7H8 261 aaKnown RBP17.61■□□□□ 0.41
CPSF1-205ENST00000531042 FERMT3Q86UX7 667 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 TMEM173Q86WV6 379 aaPredicted RBP17.61■□□□□ 0.41
CPSF1-205ENST00000531042 DIS3L2Q8IYB7 885 aaKnown RBP17.61■□□□□ 0.41
CPSF1-205ENST00000531042 RNF149Q8NC42 400 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 EDAQ92838 391 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 RPGRIP1Q96KN7 1286 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 MTRQ99707 1265 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 HSD17B14Q9BPX1 270 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 INPP5FQ9Y2H2 1132 aa17.61■□□□□ 0.41
CPSF1-205ENST00000531042 WNT7AO00755 349 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 CLASP2O75122 1294 aaKnown RBP17.6■□□□□ 0.41
CPSF1-205ENST00000531042 LYPLA2O95372 231 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 CXCL14O95715 111 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 GALTP07902 379 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 FOSBP53539 338 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 RNASELQ05823 741 aaKnown RBP17.6■□□□□ 0.41
CPSF1-205ENST00000531042 ST3GAL1Q11201 340 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 TRIM29Q14134 588 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 BMS1Q14692 1282 aaKnown RBP17.6■□□□□ 0.41
CPSF1-205ENST00000531042 UBXN11Q5T124 520 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 DDX53Q86TM3 631 aaKnown RBP17.6■□□□□ 0.41
CPSF1-205ENST00000531042 VPS52Q8N1B4 723 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 CASP10Q92851 521 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 IGSF21Q96ID5 467 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 APOL5Q9BWW9 433 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 ZBP1Q9H171 429 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 TTC12Q9H892 705 aaPredicted RBP17.6■□□□□ 0.41
CPSF1-205ENST00000531042 XPNPEP1Q9NQW7 623 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 DNAJB4Q9UDY4 337 aa17.6■□□□□ 0.41
CPSF1-205ENST00000531042 HCFC2Q9Y5Z7 792 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms