RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TMEM169Q96HH4 297 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 NLRP4Q96MN2 994 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 ZBP1Q9H171 429 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 DHX33Q9H6R0 707 aaKnown RBP12.72□□□□□ -0.37
VPS28-214ENST00000531032 AGPAT5Q9NUQ2 364 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 WRAP73Q9P2S5 460 aaPredicted RBP12.72□□□□□ -0.37
VPS28-214ENST00000531032 COL4A3BPQ9Y5P4 624 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 IRAK3Q9Y616 596 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 KMT2EQ8IZD2 1858 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 MEIS3P2A8K0S8 358 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 ZC3H11AO75152 810 aaKnown RBP eCLIP12.71□□□□□ -0.377e-6■■■■■ 33.7
VPS28-214ENST00000531032 OFD1O75665 1012 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 P4HBP07237 508 aaKnown RBP12.71□□□□□ -0.37
VPS28-214ENST00000531032 XBP1P17861 261 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 POLGP54098 1239 aaPredicted RBP12.71□□□□□ -0.37
VPS28-214ENST00000531032 NPEPPSP55786 919 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 ITIH3Q06033 890 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 BMS1Q14692 1282 aaKnown RBP12.71□□□□□ -0.37
VPS28-214ENST00000531032 PTPN21Q16825 1174 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 NOMO2Q5JPE7 1267 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 CATSPER4Q7RTX7 472 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 DDX53Q86TM3 631 aaKnown RBP12.71□□□□□ -0.37
VPS28-214ENST00000531032 C4orf19Q8IY42 314 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 EXOC8Q8IYI6 725 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 VPS52Q8N1B4 723 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 ZNF579Q8NAF0 562 aaKnown RBP12.71□□□□□ -0.37
VPS28-214ENST00000531032 HAS1Q92839 578 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 ASIC4Q96FT7 647 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 IGSF21Q96ID5 467 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 CEP170P1Q96L14 293 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 APOL5Q9BWW9 433 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 SLKQ9H2G2 1235 aaPredicted RBP12.71□□□□□ -0.37
VPS28-214ENST00000531032 ADAM7Q9H2U9 754 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 NRDE2Q9H7Z3 1164 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 TBC1D13Q9NVG8 400 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 TPCN1Q9ULQ1 816 aa12.71□□□□□ -0.37
VPS28-214ENST00000531032 ARID2Q68CP9 1835 aa12.71□□□□□ -0.38
VPS28-214ENST00000531032 CCNT1O60563 726 aaKnown RBP12.7□□□□□ -0.38
VPS28-214ENST00000531032 PFKFB2O60825 505 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 GALTP07902 379 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 CTSAP10619 480 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 RFC5P40937 340 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 MRE11P49959 708 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 SPIRE1Q08AE8 756 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 GIT2Q14161 759 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 EPHA7Q15375 998 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 LONRF3Q496Y0 759 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 CES5AQ6NT32 575 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 PIK3AP1Q6ZUJ8 805 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 FBXL6Q8N531 539 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 OXER1Q8TDS5 423 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 BCL7CQ8WUZ0 217 aaPredicted RBP12.7□□□□□ -0.38
VPS28-214ENST00000531032 PSPC1Q8WXF1 523 aaKnown RBP12.7□□□□□ -0.38
VPS28-214ENST00000531032 NECTIN4Q96NY8 510 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 NAP1L4Q99733 375 aaKnown RBP12.7□□□□□ -0.38
VPS28-214ENST00000531032 LXNQ9BS40 222 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 GJB4Q9NTQ9 266 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 CDH22Q9UJ99 828 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 INPP5FQ9Y2H2 1132 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 NR2E1Q9Y466 385 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 PCDHB2Q9Y5E7 798 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 ZDBF2Q9HCK1 2354 aa12.7□□□□□ -0.38
VPS28-214ENST00000531032 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.69□□□□□ -0.38
VPS28-214ENST00000531032 GAS2O43903 313 aaKnown RBP12.69□□□□□ -0.38
VPS28-214ENST00000531032 B4GALT3O60512 393 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 CTDNEP1O95476 244 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 CXCL14O95715 111 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 HOXA11P31270 313 aaPredicted RBP12.69□□□□□ -0.38
VPS28-214ENST00000531032 YWHABP31946 246 aaKnown RBP12.69□□□□□ -0.38
VPS28-214ENST00000531032 RNASELQ05823 741 aaKnown RBP12.69□□□□□ -0.38
VPS28-214ENST00000531032 LAMTOR4Q0VGL1 99 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 EARS2Q5JPH6 523 aaKnown RBP12.69□□□□□ -0.38
VPS28-214ENST00000531032 AGMOQ6ZNB7 445 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 SRGAP1Q7Z6B7 1085 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 MRPL10Q7Z7H8 261 aaKnown RBP12.69□□□□□ -0.38
VPS28-214ENST00000531032 POTEDQ86YR6 584 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 SUGP1Q8IWZ8 645 aaKnown RBP12.69□□□□□ -0.38
VPS28-214ENST00000531032 PRSS33Q8NF86 280 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 PRPF31Q8WWY3 499 aaKnown RBP12.69□□□□□ -0.38
VPS28-214ENST00000531032 TMEM143Q96AN5 459 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 PGBD4Q96DM1 585 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 PRRX2Q99811 253 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 VN1R3Q9BXE9 311 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 POMKQ9H5K3 350 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 MINDY3Q9H8M7 445 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 DZANK1Q9NVP4 752 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 RGL1Q9NZL6 768 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 DNAJB4Q9UDY4 337 aa12.69□□□□□ -0.38
VPS28-214ENST00000531032 CNTNAP2Q9UHC6 1331 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 SRGAP2CP0DJJ0 459 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 SP100P23497 879 aaPredicted RBP12.68□□□□□ -0.38
VPS28-214ENST00000531032 CA8P35219 290 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 MTHFRP42898 656 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 SLC11A1P49279 550 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 EMC2Q15006 297 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 UBXN11Q5T124 520 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 IER5LQ5T953 404 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 OTUD6AQ7L8S5 288 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 FERMT3Q86UX7 667 aa12.68□□□□□ -0.38
VPS28-214ENST00000531032 ZNF280BQ86YH2 543 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms