RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LGALS16A8MUM7 142 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 DNM2P50570 870 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 PEX3P56589 373 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 HAUS6Q7Z4H7 955 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 ZSCAN30Q86W11 494 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 CCDC150Q8NCX0 1101 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 TMEM174Q8WUU8 243 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 ACCSQ96QU6 501 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 MTG1Q9BT17 334 aaPredicted RBP23.27■■□□□ 1.32
VPS28-212ENST00000530836 VPS16Q9H269 839 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 XPNPEP1Q9NQW7 623 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 EXOC7Q9UPT5 735 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 ITIH6Q6UXX5 1313 aa23.27■■□□□ 1.32
VPS28-212ENST00000530836 HBP1O60381 514 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 PRKCSHP14314 528 aaPredicted RBP23.26■■□□□ 1.31
VPS28-212ENST00000530836 NR2F2P24468 414 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 MYBPC2Q14324 1141 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 PPP2R5AQ15172 486 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 ZC2HC1CQ53FD0 456 aaPredicted RBP23.26■■□□□ 1.31
VPS28-212ENST00000530836 KCNN1Q92952 543 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 VTI1AQ96AJ9 217 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 CEP89Q96ST8 783 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 GPRC5CQ9NQ84 441 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 STARD7Q9NQZ5 370 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 A0A1W2PQC6 194 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 PBX1P40424 430 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 NPTX2P47972 431 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 SYCP3Q8IZU3 236 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 NOC4LQ9BVI4 516 aaKnown RBP23.26■■□□□ 1.31
VPS28-212ENST00000530836 KMT5AQ9NQR1 393 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 ZKSCAN5Q9Y2L8 839 aa23.26■■□□□ 1.31
VPS28-212ENST00000530836 SLC16A3O15427 465 aaKnown RBP23.25■■□□□ 1.31
VPS28-212ENST00000530836 TGFB1I1O43294 461 aa23.25■■□□□ 1.31
VPS28-212ENST00000530836 MAFO75444 373 aaPredicted RBP23.25■■□□□ 1.31
VPS28-212ENST00000530836 NR3C1P04150 777 aa23.25■■□□□ 1.31
VPS28-212ENST00000530836 PLCB4Q15147 1175 aa23.25■■□□□ 1.31
VPS28-212ENST00000530836 MAN2A1Q16706 1144 aa23.25■■□□□ 1.31
VPS28-212ENST00000530836 CCDC40Q4G0X9 1142 aa23.25■■□□□ 1.31
VPS28-212ENST00000530836 SLC39A5Q6ZMH5 540 aa23.25■■□□□ 1.31
VPS28-212ENST00000530836 TCP11Q8WWU5 503 aa23.25■■□□□ 1.31
VPS28-212ENST00000530836 KAT2BQ92831 832 aa23.25■■□□□ 1.31
VPS28-212ENST00000530836 C16orf70Q9BSU1 422 aa23.25■■□□□ 1.31
VPS28-212ENST00000530836 POLR3FQ9H1D9 316 aaPredicted RBP23.25■■□□□ 1.31
VPS28-212ENST00000530836 METTL14Q9HCE5 456 aaKnown RBP23.25■■□□□ 1.31
VPS28-212ENST00000530836 ZNF215Q9UL58 517 aaPredicted RBP23.25■■□□□ 1.31
VPS28-212ENST00000530836 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.25■■□□□ 1.318e-7■■□□□ 13.6
VPS28-212ENST00000530836 CCDC169A6NNP5 214 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 TEX33O43247 280 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 LGALS2P05162 132 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 UBXN1Q04323 297 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 PPP2R3AQ06190 1150 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 TBC1D8BQ0IIM8 1120 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 FKBP15Q5T1M5 1219 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 FRMD5Q7Z6J6 570 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 SLC9A9Q8IVB4 645 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 EEF2KMTQ96G04 330 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 DNAH12Q6ZR08 3092 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 ZMYM2Q9UBW7 1377 aa23.24■■□□□ 1.31
VPS28-212ENST00000530836 NRDCO43847 1150 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 ZNF286BP0CG31 522 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 ATN1P54259 1190 aaPredicted RBP23.23■■□□□ 1.31
VPS28-212ENST00000530836 KCNA1Q09470 495 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 TRIM14Q14142 442 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 ZNF484Q5JVG2 852 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 C1orf53Q5VUE5 145 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 LRRC8AQ8IWT6 810 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 TMEM161BQ8NDZ6 487 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 MKNK1Q9BUB5 465 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 TRPC6Q9Y210 931 aa23.23■■□□□ 1.31
VPS28-212ENST00000530836 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.23■■□□□ 1.31
VPS28-212ENST00000530836 A0A0U1RQG5 324 aaPredicted RBP23.22■■□□□ 1.31
VPS28-212ENST00000530836 SLC16A4O15374 487 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 F2P00734 622 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 SFPQP23246 707 aaKnown RBP eCLIP23.22■■□□□ 1.31
VPS28-212ENST00000530836 MSNP26038 577 aaKnown RBP23.22■■□□□ 1.31
VPS28-212ENST00000530836 MARK3P27448 753 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 ARL2P36404 184 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 NAMPTP43490 491 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 TBX2Q13207 712 aaPredicted RBP23.22■■□□□ 1.31
VPS28-212ENST00000530836 ITGA7Q13683 1181 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 VWA3BQ502W6 1294 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 TRIM50Q86XT4 487 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 C12orf56Q8IXR9 622 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 AGPAT3Q9NRZ7 376 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 GRIN2DO15399 1336 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 ESPNB1AK53 854 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 PES1O00541 588 aaKnown RBP23.22■■□□□ 1.31
VPS28-212ENST00000530836 TPM1P09493 284 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 SNX17Q15036 470 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 IER5Q5VY09 327 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 SLC43A3Q8NBI5 491 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 IQCDQ96DY2 449 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 KATNAL1Q9BW62 490 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 SEZ6LQ9BYH1 1024 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 NDST4Q9H3R1 872 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 TBX20Q9UMR3 447 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 COL1A2P08123 1366 aa23.22■■□□□ 1.31
VPS28-212ENST00000530836 IGKV6-21A0A0C4DH24 114 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 H3BRB1 525 aa23.21■■□□□ 1.31
VPS28-212ENST00000530836 ARVCFO00192 962 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms