RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 EPCAMP16422 314 aa26.47■■□□□ 1.83
CPSF1-202ENST00000527827 POLGP54098 1239 aaPredicted RBP26.47■■□□□ 1.83
CPSF1-202ENST00000527827 SSRP1Q08945 709 aaKnown RBP26.47■■□□□ 1.83
CPSF1-202ENST00000527827 NOMO2Q5JPE7 1267 aa26.47■■□□□ 1.83
CPSF1-202ENST00000527827 KSR1Q8IVT5 923 aa26.47■■□□□ 1.83
CPSF1-202ENST00000527827 TRIM22Q8IYM9 498 aa26.47■■□□□ 1.83
CPSF1-202ENST00000527827 INO80BQ9C086 356 aaPredicted RBP26.47■■□□□ 1.83
CPSF1-202ENST00000527827 ZNF623O75123 536 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 OFD1O75665 1012 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 GALTP07902 379 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 CTSAP10619 480 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 MTMR3Q13615 1198 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 MOXD1Q6UVY6 613 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 GLB1LQ6UWU2 654 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 UBALD2Q8IYN6 164 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 DAGLBQ8NCG7 672 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 FEZF2Q8TBJ5 459 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 SLC22A17Q8WUG5 538 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 DZANK1Q9NVP4 752 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 INPP5FQ9Y2H2 1132 aa26.46■■□□□ 1.83
CPSF1-202ENST00000527827 DENND4AQ7Z401 1863 aa26.45■■□□□ 1.83
CPSF1-202ENST00000527827 B4GALT3O60512 393 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 PSMC5P62195 406 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 GIT2Q14161 759 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 PLA2G4FQ68DD2 849 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 KIAA1841Q6NSI8 718 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 CATSPER4Q7RTX7 472 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 NLRP4Q96MN2 994 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 AIFM3Q96NN9 605 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 VN1R3Q9BXE9 311 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 SMOC2Q9H3U7 446 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 DNAJB4Q9UDY4 337 aa26.45■■□□□ 1.82
CPSF1-202ENST00000527827 CARNS1A5YM72 827 aa26.44■■□□□ 1.82
CPSF1-202ENST00000527827 EML1O00423 815 aa26.44■■□□□ 1.82
CPSF1-202ENST00000527827 DEXIO95424 95 aa26.44■■□□□ 1.82
CPSF1-202ENST00000527827 SLC11A1P49279 550 aa26.44■■□□□ 1.82
CPSF1-202ENST00000527827 RAB27AP51159 221 aa26.44■■□□□ 1.82
CPSF1-202ENST00000527827 RUFY3Q7L099 469 aa26.44■■□□□ 1.82
CPSF1-202ENST00000527827 IFT122Q9HBG6 1241 aa26.44■■□□□ 1.82
CPSF1-202ENST00000527827 ZSWIM6Q9HCJ5 1215 aa26.44■■□□□ 1.82
CPSF1-202ENST00000527827 PLXNA3P51805 1871 aa26.44■■□□□ 1.82
CPSF1-202ENST00000527827 SLC37A4O43826 429 aa26.43■■□□□ 1.82
CPSF1-202ENST00000527827 ASGR2P07307 311 aa26.43■■□□□ 1.82
CPSF1-202ENST00000527827 ATAT1Q5SQI0 421 aa26.43■■□□□ 1.82
CPSF1-202ENST00000527827 ZNF280BQ86YH2 543 aa26.43■■□□□ 1.82
CPSF1-202ENST00000527827 ZDHHC14Q8IZN3 488 aa26.43■■□□□ 1.82
CPSF1-202ENST00000527827 TMEM87AQ8NBN3 555 aa26.43■■□□□ 1.82
CPSF1-202ENST00000527827 DDX25Q9UHL0 483 aaKnown RBP26.43■■□□□ 1.82
CPSF1-202ENST00000527827 ZFHX2Q9C0A1 2572 aaPredicted RBP26.43■■□□□ 1.82
CPSF1-202ENST00000527827 ST18O60284 1047 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 REC8O95072 547 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 NUBP1P53384 320 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 NPEPPSP55786 919 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 RNASELQ05823 741 aaKnown RBP26.42■■□□□ 1.82
CPSF1-202ENST00000527827 NONOQ15233 471 aaKnown RBP eCLIP26.42■■□□□ 1.82
CPSF1-202ENST00000527827 INF2Q27J81 1249 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 AGMOQ6ZNB7 445 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 ZNF579Q8NAF0 562 aaKnown RBP26.42■■□□□ 1.82
CPSF1-202ENST00000527827 TDRD5Q8NAT2 981 aaKnown RBP26.42■■□□□ 1.82
CPSF1-202ENST00000527827 ATOH1Q92858 354 aaPredicted RBP26.42■■□□□ 1.82
CPSF1-202ENST00000527827 JPH2Q9BR39 696 aaPredicted RBP26.42■■□□□ 1.82
CPSF1-202ENST00000527827 LARP6Q9BRS8 491 aaKnown RBP26.42■■□□□ 1.82
CPSF1-202ENST00000527827 GBP3Q9H0R5 595 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 IRF2BPLQ9H1B7 796 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 CYP26B1Q9NR63 512 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 AGPAT5Q9NUQ2 364 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 VAV3Q9UKW4 847 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 PCDHB2Q9Y5E7 798 aa26.42■■□□□ 1.82
CPSF1-202ENST00000527827 H0Y858 1186 aa26.41■■□□□ 1.82
CPSF1-202ENST00000527827 PPP2R5CQ13362 524 aa26.41■■□□□ 1.82
CPSF1-202ENST00000527827 PTPN14Q15678 1187 aa26.41■■□□□ 1.82
CPSF1-202ENST00000527827 GALNT17Q6IS24 598 aa26.41■■□□□ 1.82
CPSF1-202ENST00000527827 FAM177A1Q8N128 213 aaPredicted RBP26.41■■□□□ 1.82
CPSF1-202ENST00000527827 ZNF274Q96GC6 653 aaPredicted RBP26.41■■□□□ 1.82
CPSF1-202ENST00000527827 LIMD1Q9UGP4 676 aa26.41■■□□□ 1.82
CPSF1-202ENST00000527827 DBR1Q9UK59 544 aaKnown RBP26.41■■□□□ 1.82
CPSF1-202ENST00000527827 USTQ9Y2C2 406 aa26.41■■□□□ 1.82
CPSF1-202ENST00000527827 COL4A3BPQ9Y5P4 624 aa26.41■■□□□ 1.82
CPSF1-202ENST00000527827 CPLX1O14810 134 aa26.4■■□□□ 1.82
CPSF1-202ENST00000527827 GALR2O43603 387 aaPredicted RBP26.4■■□□□ 1.82
CPSF1-202ENST00000527827 GFRA3O60609 400 aa26.4■■□□□ 1.82
CPSF1-202ENST00000527827 DDHD2O94830 711 aa26.4■■□□□ 1.82
CPSF1-202ENST00000527827 QARSP47897 775 aaKnown RBP26.4■■□□□ 1.82
CPSF1-202ENST00000527827 AFF1P51825 1210 aaKnown RBP26.4■■□□□ 1.82
CPSF1-202ENST00000527827 TMC5Q6UXY8 1006 aa26.4■■□□□ 1.82
CPSF1-202ENST00000527827 KRT25Q7Z3Z0 450 aa26.4■■□□□ 1.82
CPSF1-202ENST00000527827 MRPL10Q7Z7H8 261 aaKnown RBP26.4■■□□□ 1.82
CPSF1-202ENST00000527827 CABP7Q86V35 215 aa26.4■■□□□ 1.82
CPSF1-202ENST00000527827 TMEM105Q8N8V8 129 aa26.4■■□□□ 1.82
CPSF1-202ENST00000527827 PGBD4Q96DM1 585 aa26.4■■□□□ 1.82
CPSF1-202ENST00000527827 WRAP73Q9P2S5 460 aaPredicted RBP26.4■■□□□ 1.82
CPSF1-202ENST00000527827 C2orf16Q68DN1 1984 aa26.4■■□□□ 1.82
CPSF1-202ENST00000527827 UBXN11Q5T124 520 aa26.39■■□□□ 1.82
CPSF1-202ENST00000527827 PLCD3Q8N3E9 789 aa26.39■■□□□ 1.82
CPSF1-202ENST00000527827 PRPF31Q8WWY3 499 aaKnown RBP26.39■■□□□ 1.82
CPSF1-202ENST00000527827 DHX33Q9H6R0 707 aaKnown RBP26.39■■□□□ 1.82
CPSF1-202ENST00000527827 MINDY3Q9H8M7 445 aa26.39■■□□□ 1.82
CPSF1-202ENST00000527827 KCNMB3Q9NPA1 279 aa26.39■■□□□ 1.82
CPSF1-202ENST00000527827 KCNJ14Q9UNX9 436 aa26.39■■□□□ 1.82
CPSF1-202ENST00000527827 HOXA11P31270 313 aaPredicted RBP26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms