RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TRIM32Q13049 653 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 ALCAMQ13740 583 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 KNOP1Q1ED39 458 aaKnown RBP20.7■□□□□ 0.9
VPS28-207ENST00000526977 CYP26C1Q6V0L0 522 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 SLAIN1Q8ND83 568 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 NTPCRQ9BSD7 190 aaKnown RBP20.7■□□□□ 0.9
VPS28-207ENST00000526977 GPRC5CQ9NQ84 441 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 AGPAT5Q9NUQ2 364 aa20.7■□□□□ 0.9
VPS28-207ENST00000526977 KPNA6O60684 536 aa20.69■□□□□ 0.9
VPS28-207ENST00000526977 PRPF6O94906 941 aaKnown RBP20.69■□□□□ 0.9
VPS28-207ENST00000526977 CCDC175P0C221 793 aa20.69■□□□□ 0.9
VPS28-207ENST00000526977 RARBP10826 455 aa20.69■□□□□ 0.9
VPS28-207ENST00000526977 FSCN1Q16658 493 aaKnown RBP20.69■□□□□ 0.9
VPS28-207ENST00000526977 BMT2Q1RMZ1 405 aa20.69■□□□□ 0.9
VPS28-207ENST00000526977 EDRF1Q3B7T1 1238 aa20.69■□□□□ 0.9
VPS28-207ENST00000526977 MAP3K21Q5TCX8 1036 aa20.69■□□□□ 0.9
VPS28-207ENST00000526977 PPP4R3CPQ6ZMV5 832 aa20.69■□□□□ 0.9
VPS28-207ENST00000526977 LENG1Q96BZ8 264 aaPredicted RBP20.69■□□□□ 0.9
VPS28-207ENST00000526977 TRAF3IP3Q9Y228 551 aa20.69■□□□□ 0.9
VPS28-207ENST00000526977 ZBTB42B2RXF5 422 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 GNA14O95837 355 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 TRIM21P19474 475 aaKnown RBP20.68■□□□□ 0.9
VPS28-207ENST00000526977 NMT1P30419 496 aaKnown RBP20.68■□□□□ 0.9
VPS28-207ENST00000526977 NKX3-2P78367 333 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 DMP1Q13316 513 aaPredicted RBP20.68■□□□□ 0.9
VPS28-207ENST00000526977 ADAM9Q13443 819 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 FIGNQ5HY92 759 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 SPIRE2Q8WWL2 714 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 IFT74Q96LB3 600 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 PCMTD1Q96MG8 357 aaPredicted RBP20.68■□□□□ 0.9
VPS28-207ENST00000526977 CHP1Q99653 195 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 ST6GALNAC4Q9H4F1 302 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 SIK3Q9Y2K2 1263 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 COL1A2P08123 1366 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 UBE4BO95155 1302 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 MARSP56192 900 aaKnown RBP20.68■□□□□ 0.9
VPS28-207ENST00000526977 PEX3P56589 373 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 TCP11Q8WWU5 503 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 TSKSQ9UJT2 592 aa20.68■□□□□ 0.9
VPS28-207ENST00000526977 IGKV6-21A0A0C4DH24 114 aa20.67■□□□□ 0.9
VPS28-207ENST00000526977 F2P00734 622 aa20.67■□□□□ 0.9
VPS28-207ENST00000526977 INSRRP14616 1297 aa20.67■□□□□ 0.9
VPS28-207ENST00000526977 CCDC40Q4G0X9 1142 aa20.67■□□□□ 0.9
VPS28-207ENST00000526977 IER5Q5VY09 327 aa20.67■□□□□ 0.9
VPS28-207ENST00000526977 WDR59Q6PJI9 974 aa20.67■□□□□ 0.9
VPS28-207ENST00000526977 STRA6Q9BX79 667 aa20.67■□□□□ 0.9
VPS28-207ENST00000526977 POLR3FQ9H1D9 316 aaPredicted RBP20.67■□□□□ 0.9
VPS28-207ENST00000526977 UPF3AQ9H1J1 476 aaKnown RBP20.67■□□□□ 0.9
VPS28-207ENST00000526977 TRIM17Q9Y577 477 aa20.67■□□□□ 0.9
VPS28-207ENST00000526977 ARID2Q68CP9 1835 aa20.67■□□□□ 0.9
VPS28-207ENST00000526977 A0A1W2PQJ5 194 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 PDXKO00764 312 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 MAGEB2O15479 319 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 C6orf222P0C671 652 aaPredicted RBP20.66■□□□□ 0.9
VPS28-207ENST00000526977 SCP2P22307 547 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 ABCD1P33897 745 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 ARL2P36404 184 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 NCKAP1LP55160 1127 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 ZBED6P86452 979 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 PPP2R5AQ15172 486 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 DNAJC5GQ8N7S2 189 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 TSC1Q92574 1164 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 DNAI1Q9UI46 699 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 H0YCG3 227 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 K7ENM7 598 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 CETN3O15182 167 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 ZEB2O60315 1214 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 CCND3P30281 292 aaPredicted RBP20.66■□□□□ 0.9
VPS28-207ENST00000526977 NPTX2P47972 431 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 TSR1Q2NL82 804 aaKnown RBP20.66■□□□□ 0.9
VPS28-207ENST00000526977 TRIM59Q8IWR1 403 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 TMEM143Q96AN5 459 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 KATNAL1Q9BW62 490 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 KMT5AQ9NQR1 393 aa20.66■□□□□ 0.9
VPS28-207ENST00000526977 RRN3P2A6NIE6 340 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 CCDC169A6NNP5 214 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 CTIFO43310 598 aaKnown RBP20.65■□□□□ 0.9
VPS28-207ENST00000526977 PPP1R37O75864 691 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 GRK4P32298 578 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 SOX10P56693 466 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 GTF2BQ00403 316 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 BEX3Q00994 111 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 KCNA1Q09470 495 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 GNASQ5JWF2 1037 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 HAUS6Q7Z4H7 955 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 KAT2BQ92831 832 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 IQCDQ96DY2 449 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 PHLPP2Q6ZVD8 1323 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 A0A0U1RQJ8 604 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 FANCGO15287 622 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 MYL3P08590 195 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 NR2F2P24468 414 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 MEA1Q16626 185 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 ZC2HC1CQ53FD0 456 aaPredicted RBP20.65■□□□□ 0.9
VPS28-207ENST00000526977 CCDC155Q8N6L0 562 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 ATRIPQ8WXE1 791 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 TMEM206Q9H813 350 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 SUGCTQ9HAC7 445 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 XPNPEP3Q9NQH7 507 aa20.65■□□□□ 0.9
VPS28-207ENST00000526977 EPN1Q9Y6I3 576 aaPredicted RBP20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms