RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 MEX3CQ5U5Q3 659 aaKnown RBP9.04□□□□□ -0.96
CSMD1-213ENST00000523488 DDX42Q86XP3 938 aaKnown RBP eCLIP9.04□□□□□ -0.96
CSMD1-213ENST00000523488 TRIM59Q8IWR1 403 aa9.04□□□□□ -0.96
CSMD1-213ENST00000523488 ERP44Q9BS26 406 aa9.04□□□□□ -0.96
CSMD1-213ENST00000523488 TRIM31Q9BZY9 425 aa9.04□□□□□ -0.96
CSMD1-213ENST00000523488 CARD9Q9H257 536 aa9.04□□□□□ -0.96
CSMD1-213ENST00000523488 FAM207AQ9NSI2 230 aaPredicted RBP9.04□□□□□ -0.96
CSMD1-213ENST00000523488 STX18Q9P2W9 335 aaKnown RBP9.04□□□□□ -0.96
CSMD1-213ENST00000523488 NOC2LQ9Y3T9 749 aaKnown RBP9.04□□□□□ -0.96
CSMD1-213ENST00000523488 RGS16O15492 202 aaPredicted RBP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 RIPK2O43353 540 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 PTCD1O75127 700 aaKnown RBP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 CALM1P0DP23 149 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 CALM2P0DP24 149 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 CALM3P0DP25 149 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 VCAM1P19320 739 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 PTDSS1P48651 473 aaKnown RBP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 XIAPP98170 497 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 ECM1Q16610 540 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 CNPY1Q3B7I2 92 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 TMEM119Q4V9L6 283 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 LRRC24Q50LG9 513 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 ZNF654Q8IZM8 581 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 C10orf82Q8WW14 230 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 CD101Q93033 1021 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 RMDN2Q96LZ7 410 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 LZTS2Q9BRK4 669 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 RIC8AQ9NPQ8 531 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 AAASQ9NRG9 546 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 PLK2Q9NYY3 685 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 ZNF212Q9UDV6 495 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 BZW2Q9Y6E2 419 aaKnown RBP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 ECEL1O95672 775 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 POLGP54098 1239 aaPredicted RBP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 TRMT10CQ7L0Y3 403 aaKnown RBP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 RRAGAQ7L523 313 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 IFNL3Q8IZI9 196 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 METTL13Q8N6R0 699 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 FBXO41Q8TF61 875 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 RUNDC3BQ96NL0 473 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 DDX23Q9BUQ8 820 aaKnown RBP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 STMN4Q9H169 189 aaPredicted RBP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 ABCF2Q9UG63 623 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 ITGB1BP2Q9UKP3 347 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 UMODL1Q5DID0 1318 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 KCNK3O14649 394 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 ASLP04424 464 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 ABHD2P08910 425 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 VHLP40337 213 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 CD97P48960 835 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 CEP128Q6ZU80 1094 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 TANGO6Q9C0B7 1094 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 PIH1D3Q9NQM4 214 aaKnown RBP9.03□□□□□ -0.96
CSMD1-213ENST00000523488 NMRK1Q9NWW6 199 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 FETUBQ9UGM5 382 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 ATP8A1Q9Y2Q0 1164 aa9.03□□□□□ -0.96
CSMD1-213ENST00000523488 XIRP1Q702N8 1843 aaKnown RBP9.02□□□□□ -0.96
CSMD1-213ENST00000523488 PITPNM2Q9BZ72 1349 aa9.02□□□□□ -0.96
CSMD1-213ENST00000523488 CCDC162PA2VCL2 907 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 GTPBP10A4D1E9 387 aaKnown RBP9.02□□□□□ -0.97
CSMD1-213ENST00000523488 H0Y3Z8 333 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 BUD23O43709 281 aaKnown RBP9.02□□□□□ -0.97
CSMD1-213ENST00000523488 RFC5P40937 340 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 ZAP70P43403 619 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 SCNN1BP51168 640 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 KRT72Q14CN4 511 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 NKX1-1Q15270 411 aaPredicted RBP9.02□□□□□ -0.97
CSMD1-213ENST00000523488 RPS6KA1Q15418 735 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 LMBR1LQ6UX01 489 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 C4orf50Q6ZRC1 276 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 ZNF365Q70YC5 407 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 COPS6Q7L5N1 327 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 VSIG1Q86XK7 387 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 KIAA0825Q8IV33 1275 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 SMC1BQ8NDV3 1235 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 MAML3Q96JK9 1138 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 RPS6KC1Q96S38 1066 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 PHACTR1Q9C0D0 580 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 KRT82Q9NSB4 513 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 LRRC37AA6NMS7 1700 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 LTBP1Q14766 1721 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 LGR5O75473 907 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 HSPA6P17066 643 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 TAC1P20366 129 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 SERPINB8P50452 374 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 CDK7P50613 346 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 PMS2P54278 862 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 SESN3P58005 492 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 WDR72Q3MJ13 1102 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 MGARPQ8TDB4 240 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 NLRP3Q96P20 1036 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.02□□□□□ -0.973e-7■■■■□ 22.2
CSMD1-213ENST00000523488 SIX2Q9NPC8 291 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 UBN1Q9NPG3 1134 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 ZNF804BA4D1E1 1349 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 FAM205AQ6ZU69 1335 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 SNRPA1P09661 255 aaKnown RBP9.02□□□□□ -0.97
CSMD1-213ENST00000523488 PHKG2P15735 406 aa9.02□□□□□ -0.97
CSMD1-213ENST00000523488 PDE6AP16499 860 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms