RNA–Protein interactions for RNA: ENST00000523125.5

VEGFA-223, Transcript of vascular endothelial growth factor A, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 541 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-223	ENST00000523125	NRIP1	P48552	1158 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	ZNF174	Q15697	407 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	SRGAP1	Q7Z6B7	1085 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	RBM23	Q86U06	439 aa	Known RBP	13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	EFHB	Q8N7U6	833 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	RNF149	Q8NC42	400 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	PIGO	Q8TEQ8	1089 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	MRPS27	Q92552	414 aa	Known RBP	13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	MSLNL	Q96KJ4	702 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	MTR	Q99707	1265 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	TLR9	Q9NR96	1032 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	FAM105A	Q9NUU6	356 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	CLEC1B	Q9P126	229 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	LZTS1	Q9Y250	596 aa		13.8	□□□□□ -0.2
VEGFA-223	ENST00000523125	SKI	P12755	728 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	XRCC6	P12956	609 aa	Known RBP eCLIP	13.79	□□□□□ -0.2	3e-10	■□□□□ 9
VEGFA-223	ENST00000523125	U2AF2	P26368	475 aa	Known RBP eCLIP	13.79	□□□□□ -0.2	2e-48	■□□□□ 11.2
VEGFA-223	ENST00000523125	ARL2	P36404	184 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	RARRES1	P49788	294 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	PTEN	P60484	403 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	CLUL1	Q15846	466 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	LONRF3	Q496Y0	759 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	UBXN11	Q5T124	520 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	CATSPER3	Q86XQ3	398 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	NOSTRIN	Q8IVI9	506 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	C4orf32	Q8N8J7	132 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	ZNF558	Q96NG5	402 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	EPHX3	Q9H6B9	360 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	TLE6	Q9H808	572 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	PCDHB2	Q9Y5E7	798 aa		13.79	□□□□□ -0.2
VEGFA-223	ENST00000523125	PER2	O15055	1255 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	MBTPS2	O43462	519 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	MED24	O75448	989 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	OFD1	O75665	1012 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	DGAT1	O75907	488 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	CD2BP2	O95400	341 aa	Known RBP	13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	OR52Z1	P0C646	297 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	TEC	P42680	631 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	TOB1	P50616	345 aa	Predicted RBP	13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	RAB27A	P51159	221 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	BCAR1	P56945	870 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	RBM10	P98175	930 aa	Known RBP	13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	POU5F1B	Q06416	359 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	ORC2	Q13416	577 aa	Predicted RBP	13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	CAPS	Q13938	189 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	MXD4	Q14582	209 aa	Predicted RBP	13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	NBR1	Q14596	966 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	RABEP1	Q15276	862 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	PDE12	Q6L8Q7	609 aa	Known RBP	13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	AGMO	Q6ZNB7	445 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	MRPL10	Q7Z7H8	261 aa	Known RBP	13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	GJD3	Q8N144	294 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	SLC39A11	Q8N1S5	342 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	FAM184A	Q8NB25	1140 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	VN1R2	Q8NFZ6	395 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	ASAP3	Q8TDY4	903 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	MICAL1	Q8TDZ2	1067 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	PPP2R3C	Q969Q6	453 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	TUFT1	Q9NNX1	390 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	SPG21	Q9NZD8	308 aa		13.78	□□□□□ -0.2
VEGFA-223	ENST00000523125	C19orf67	A6NJJ6	358 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	NT5C1B-RDH14	C9J2C7	533 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	B4GALT3	O60512	393 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	EYA4	O95677	639 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	GLRA2	P23416	452 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	PPM1A	P35813	382 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	TRAPPC10	P48553	1259 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	AFF1	P51825	1210 aa	Known RBP	13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	ZP2	Q05996	745 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	KCNC3	Q14003	757 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	SMAD2	Q15796	467 aa	Known RBP	13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	AMHR2	Q16671	573 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	DUSP6	Q16828	381 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	NOMO2	Q5JPE7	1267 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	TTC38	Q5R3I4	469 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	GLB1L	Q6UWU2	654 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	MRPL9	Q9BYD2	267 aa	Known RBP	13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	NRDE2	Q9H7Z3	1164 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	TBC1D13	Q9NVG8	400 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	PRKAG3	Q9UGI9	489 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	CD207	Q9UJ71	328 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	FAM50B	Q9Y247	325 aa		13.77	□□□□□ -0.21
VEGFA-223	ENST00000523125	HIDE1	A8MVS5	230 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	TSPAN1	O60635	241 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	RPA1	P27694	616 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	ALDH7A1	P49419	539 aa	Known RBP	13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	NDUFV1	P49821	464 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	KRT17	Q04695	432 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	MBTD1	Q05BQ5	628 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	COASY	Q13057	564 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	SMAD4	Q13485	552 aa	Known RBP	13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	PLPP4	Q5VZY2	271 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	POTEG	Q6S5H5	508 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	TMEM173	Q86WV6	379 aa	Predicted RBP	13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	ADHFE1	Q8IWW8	467 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	SMRP1	Q8NCR6	262 aa		13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	SMG8	Q8ND04	991 aa	Known RBP	13.76	□□□□□ -0.21
VEGFA-223	ENST00000523125	RSPH1	Q8WYR4	309 aa		13.76	□□□□□ -0.21

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