RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SART1O43290 800 aaKnown RBP14.08□□□□□ -0.16
TCOF1-213ENST00000514442 CTDNEP1O95476 244 aa14.08□□□□□ -0.16
TCOF1-213ENST00000514442 HMGCS2P54868 508 aa14.08□□□□□ -0.16
TCOF1-213ENST00000514442 GSCP56915 257 aaPredicted RBP14.08□□□□□ -0.16
TCOF1-213ENST00000514442 BPIFB4P59827 614 aa14.08□□□□□ -0.16
TCOF1-213ENST00000514442 R3HDM1Q15032 1099 aaKnown RBP14.08□□□□□ -0.16
TCOF1-213ENST00000514442 TRPM8Q7Z2W7 1104 aa14.08□□□□□ -0.16
TCOF1-213ENST00000514442 XPO6Q96QU8 1125 aaKnown RBP14.08□□□□□ -0.16
TCOF1-213ENST00000514442 NUDCD1Q96RS6 583 aa14.08□□□□□ -0.16
TCOF1-213ENST00000514442 KDM4CQ9H3R0 1056 aa14.08□□□□□ -0.16
TCOF1-213ENST00000514442 HOXC10Q9NYD6 342 aa14.08□□□□□ -0.16
TCOF1-213ENST00000514442 SERPING1P05155 500 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 MAPK4P31152 587 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 PDE1CQ14123 709 aaPredicted RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 STXBP2Q15833 593 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 PRAMEF18Q5VWM3 479 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 ZNF449Q6P9G9 518 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 HPS3Q969F9 1004 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 FAM193BQ96PV7 902 aaPredicted RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 MOV10L1Q9BXT6 1211 aaKnown RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 ZNRF3Q9ULT6 936 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 ABT1Q9ULW3 272 aaKnown RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 ZNF148Q9UQR1 794 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 SUGT1Q9Y2Z0 365 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 AP1G2O75843 785 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 GNAT1P11488 350 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 THNSL1Q8IYQ7 743 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 PDCD7Q8N8D1 485 aaKnown RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 RPAP3Q9H6T3 665 aaPredicted RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 PAPOLBQ9NRJ5 636 aaKnown RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 RNF8O76064 485 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 JAK3P52333 1124 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 MTMR2Q13614 643 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 GEN1Q17RS7 908 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 LDHDQ86WU2 507 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 HERC5Q9UII4 1024 aaKnown RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 FER1L4A9Z1Z3 1794 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 PASKQ96RG2 1323 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 NR3C1P04150 777 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 ZNF543Q08ER8 600 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 TBX2Q13207 712 aaPredicted RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 SNX1Q13596 522 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 PAPD7Q5XG87 772 aaKnown RBP14.07□□□□□ -0.16
TCOF1-213ENST00000514442 FAM20AQ96MK3 541 aa14.07□□□□□ -0.16
TCOF1-213ENST00000514442 DCTN3O75935 186 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 BFSP1Q12934 665 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 ELOA2Q8IYF1 753 aaPredicted RBP14.06□□□□□ -0.16
TCOF1-213ENST00000514442 C7orf31Q8N865 590 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 EHD4Q9H223 541 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 ATXN2Q99700 1313 aaKnown RBP14.06□□□□□ -0.16
TCOF1-213ENST00000514442 WDR64B1ANS9 1081 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 UBE2Q2LH0YL09 131 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 IPO5O00410 1097 aaKnown RBP14.06□□□□□ -0.16
TCOF1-213ENST00000514442 NDUFB10O96000 172 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 PPP2R5CQ13362 524 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 FUKQ8N0W3 1084 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 NSUN6Q8TEA1 469 aaKnown RBP14.06□□□□□ -0.16
TCOF1-213ENST00000514442 GHRP10912 638 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 DR1Q01658 176 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 GABPAQ06546 454 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 C10orf76Q5T2E6 689 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 PPP4R3CPQ6ZMV5 832 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 APOBEC3FQ8IUX4 373 aaKnown RBP14.06□□□□□ -0.16
TCOF1-213ENST00000514442 PALM2Q8IXS6 379 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 OLFM3Q96PB7 478 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.06□□□□□ -0.16
TCOF1-213ENST00000514442 NPHP3-ACAD11A0A0J9YXS1 232 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 SWSAP1Q6NVH7 229 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 C16orf86Q6ZW13 317 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 FAM149B1Q96BN6 582 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 LXNQ9BS40 222 aa14.06□□□□□ -0.16
TCOF1-213ENST00000514442 G3BP2Q9UN86 482 aaKnown RBP14.06□□□□□ -0.16
TCOF1-213ENST00000514442 GCLMP48507 274 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 PSEN1P49768 467 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 ERVK-24P63145 666 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 GRK7Q8WTQ7 553 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 SH2D3AQ9BRG2 576 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 RBM12Q9NTZ6 932 aaKnown RBP14.05□□□□□ -0.16
TCOF1-213ENST00000514442 TYW1Q9NV66 732 aaKnown RBP14.05□□□□□ -0.16
TCOF1-213ENST00000514442 GABBR1Q9UBS5 961 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 CCDC92Q53HC0 331 aaPredicted RBP14.05□□□□□ -0.16
TCOF1-213ENST00000514442 USP49Q70CQ1 688 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 MFN1Q8IWA4 741 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 C15orf41Q9Y2V0 281 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 GSTA1P08263 222 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 CHN1P15882 459 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 CARSP49589 748 aaKnown RBP14.05□□□□□ -0.16
TCOF1-213ENST00000514442 STAMBPL1Q96FJ0 436 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 EIF2AK1Q9BQI3 630 aaKnown RBP14.05□□□□□ -0.16
TCOF1-213ENST00000514442 RGL1Q9NZL6 768 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 CNOT7Q9UIV1 285 aaKnown RBP14.05□□□□□ -0.16
TCOF1-213ENST00000514442 I3L4J1 428 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 ATF2P15336 505 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 MIS12Q9H081 205 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 ZNF70Q9UC06 446 aaPredicted RBP14.05□□□□□ -0.16
TCOF1-213ENST00000514442 HPS5Q9UPZ3 1129 aa14.05□□□□□ -0.16
TCOF1-213ENST00000514442 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.05□□□□□ -0.16
TCOF1-213ENST00000514442 MROH1Q8NDA8 1641 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 LRRC53A6NM62 1247 aa14.04□□□□□ -0.16
TCOF1-213ENST00000514442 EZH2Q15910 746 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms