RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ERLEC1Q96DZ1 483 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 MYD88Q99836 296 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 STK32BQ9NY57 414 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 IL1RAPL1Q9NZN1 696 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 ZFP69BQ9UJL9 534 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 DNAJC6O75061 913 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 PDE1BQ01064 536 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 HGSNATQ68CP4 663 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 ARHGAP27Q6ZUM4 889 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 GET4Q7L5D6 327 aaPredicted RBP12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 LRRC43Q8N309 656 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 IGDCC4Q8TDY8 1250 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 ERP44Q9BS26 406 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 EBF3Q9H4W6 596 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 LY9Q9HBG7 655 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 PTTG2Q9NZH5 202 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 STX18Q9P2W9 335 aaKnown RBP12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 ZNF148Q9UQR1 794 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 SIK3Q9Y2K2 1263 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 PLEKHG1Q9ULL1 1385 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 DEXIO95424 95 aa12.9□□□□□ -0.35
LIMCH1-213ENST00000511496 FOXN2P32314 431 aa12.9□□□□□ -0.35
LIMCH1-213ENST00000511496 PDE4DQ08499 809 aa12.9□□□□□ -0.35
LIMCH1-213ENST00000511496 PDE1CQ14123 709 aaPredicted RBP12.9□□□□□ -0.35
LIMCH1-213ENST00000511496 KIF22Q14807 665 aa12.9□□□□□ -0.35
LIMCH1-213ENST00000511496 BAP1Q92560 729 aa12.9□□□□□ -0.35
LIMCH1-213ENST00000511496 CASP10Q92851 521 aa12.9□□□□□ -0.35
LIMCH1-213ENST00000511496 SNX27Q96L92 541 aa12.9□□□□□ -0.35
LIMCH1-213ENST00000511496 CFAP69A5D8W1 941 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 EXOC3O60645 756 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 DCTN3O75935 186 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 USP1O94782 785 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 DDX58O95786 925 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 TAC1P20366 129 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 EMP3P54852 163 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 CAPN12Q6ZSI9 719 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 SLC7A5P1Q8MH63 180 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 CRACR2BQ8N4Y2 399 aaPredicted RBP12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 OGFOD1Q8N543 542 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 ECSITQ9BQ95 431 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 NDEL1Q9GZM8 345 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 DRC3Q9H069 523 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 RABL2BQ9UNT1 228 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 ITM2BQ9Y287 266 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 ZFYVE16Q7Z3T8 1539 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 RPTORQ8N122 1335 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 SSU72P8A0A1W2PR75 194 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 EEF2P13639 858 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 CCNE1P24864 410 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 ACAP1Q15027 740 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 DAB2IPQ5VWQ8 1189 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 C1orf228Q6PIY5 440 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 MTDHQ86UE4 582 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 WDR75Q8IWA0 830 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 SRRM1Q8IYB3 904 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 ZDHHC18Q9NUE0 388 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 ZNF212Q9UDV6 495 aa12.89□□□□□ -0.35
LIMCH1-213ENST00000511496 PP2D1A8MPX8 630 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 ZNF862O60290 1169 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 YARSP54577 528 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 KLRC3Q07444 240 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 KLHL30Q0D2K2 578 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 TMEM266Q2M3C6 531 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 CCDC84Q86UT8 332 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 RASSF3Q86WH2 238 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 MYOCDQ8IZQ8 938 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 ATP6V0A1Q93050 837 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 EURLQ9NYK6 297 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 SELENONQ9NZV5 590 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 PHTF1Q9UMS5 762 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 ITSN1Q15811 1721 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 UMODL1Q5DID0 1318 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 NBPF26B4DH59 902 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 RIPK2O43353 540 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 FCER1AP12319 257 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 KRT2P35908 639 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 STK4Q13043 487 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 MED21Q13503 144 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 FNDC8Q8TC99 324 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 MAGEB18Q96M61 343 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 OSBPL10Q9BXB5 764 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 METTL14Q9HCE5 456 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 FAIMQ9NVQ4 179 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 TUBA8Q9NY65 449 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 AIPL1Q9NZN9 384 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 MTRF1LQ9UGC7 380 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 ARMCX3Q9UH62 379 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 NEO1Q92859 1461 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 BCL9O00512 1426 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 SMIM31A0A1B0GVY4 71 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 BICDL2A1A5D9 508 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 TLR2O60603 784 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 OXSR1O95747 527 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 AMPD1P23109 780 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 PPIDQ08752 370 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 MKRN3Q13064 507 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 ACVR2BQ13705 512 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 CROCCP2Q86T23 111 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms