RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 USP38Q8NB14 1042 aa32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 C2orf40Q9H1Z8 148 aa32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 HOOK1Q9UJC3 728 aaKnown RBP32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 SQORQ9Y6N5 450 aa32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 INO80B-WBP1J3KQ70 363 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 SLC16A4O15374 487 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 CXCL10P02778 98 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 FGFR4P22455 802 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 SMTNP53814 917 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 MBTD1Q05BQ5 628 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 DPYDQ12882 1025 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 PAK2Q13177 524 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 PPIGQ13427 754 aaKnown RBP eCLIP32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 HERC4Q5GLZ8 1057 aaPredicted RBP32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 FAM178BQ8IXR5 827 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 IFIH1Q9BYX4 1025 aaKnown RBP32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 INO80BQ9C086 356 aaPredicted RBP32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 ARHGAP28Q9P2N2 729 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 SEL1LQ9UBV2 794 aa32.67■■■□□ 2.82
LIMCH1-211ENST00000509638 H0YGN5 161 aa32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 K7ENM7 598 aa32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 TRAK2O60296 914 aa32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 SFPQP23246 707 aaKnown RBP eCLIP32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 VWCEQ96DN2 955 aa32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 MBD3O95983 291 aa32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 NCKAP1LP55160 1127 aa32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 FIZ1Q96SL8 496 aa32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 TBC1D7Q9P0N9 293 aa32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 PADI3Q9ULW8 664 aa32.66■■■□□ 2.82
LIMCH1-211ENST00000509638 MICAL3Q7RTP6 2002 aa32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 KLRC4O43908 158 aa32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 MAGEA10P43363 369 aaPredicted RBP32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 PLEKHG4Q58EX7 1191 aa32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 TMEM161BQ8NDZ6 487 aa32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 NTPCRQ9BSD7 190 aaKnown RBP32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 IL23AQ9NPF7 189 aa32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 OLFML3Q9NRN5 406 aa32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 KCNG1Q9UIX4 513 aa32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 PHLPP2Q6ZVD8 1323 aa32.65■■■□□ 2.82
LIMCH1-211ENST00000509638 PVALEFA0A1B0GWK0 134 aa32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 RPN1P04843 607 aaKnown RBP32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 EFNA5P52803 228 aa32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 ELOA2Q8IYF1 753 aaPredicted RBP32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 ERCC4Q92889 916 aaPredicted RBP32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 CCDC113Q9H0I3 377 aa32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 MRPL44Q9H9J2 332 aaKnown RBP32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 ERVK-5Q9HDB9 667 aa32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 EXOC1Q9NV70 894 aa32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 ST3GAL5Q9UNP4 418 aa32.64■■■□□ 2.82
LIMCH1-211ENST00000509638 PFKMP08237 780 aa32.63■■■□□ 2.81
LIMCH1-211ENST00000509638 ACRP10323 421 aa32.63■■■□□ 2.81
LIMCH1-211ENST00000509638 NMT1P30419 496 aaKnown RBP32.63■■■□□ 2.81
LIMCH1-211ENST00000509638 NFX1Q12986 1120 aaKnown RBP32.63■■■□□ 2.81
LIMCH1-211ENST00000509638 CATSPER4Q7RTX7 472 aa32.63■■■□□ 2.81
LIMCH1-211ENST00000509638 HPS3Q969F9 1004 aa32.63■■■□□ 2.81
LIMCH1-211ENST00000509638 LAMA2P24043 3122 aaKnown RBP32.63■■■□□ 2.81
LIMCH1-211ENST00000509638 DENND3A2RUS2 1198 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 GPR182O15218 404 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 ERLIN2O94905 339 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 EHHADHQ08426 723 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 CAMK4Q16566 473 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 RPUSD2Q8IZ73 545 aaKnown RBP32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 DBF4BQ8NFT6 615 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 SEPT8Q92599 483 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 CLSTN2Q9H4D0 955 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 MAPTP10636 758 aaKnown RBP32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 EPHB4P54760 987 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 MAPK6Q16659 721 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 KMT5BQ4FZB7 885 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 FAM26FQ5R3K3 315 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 HAUS6Q7Z4H7 955 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 FGFBP2Q9BYJ0 223 aa32.62■■■□□ 2.81
LIMCH1-211ENST00000509638 H0YCG3 227 aa32.61■■■□□ 2.81
LIMCH1-211ENST00000509638 PRKCBP05771 671 aa32.61■■■□□ 2.81
LIMCH1-211ENST00000509638 TCTN1Q2MV58 587 aa32.61■■■□□ 2.81
LIMCH1-211ENST00000509638 SLC17A8Q8NDX2 589 aa32.61■■■□□ 2.81
LIMCH1-211ENST00000509638 PRMT7Q9NVM4 692 aaPredicted RBP32.61■■■□□ 2.81
LIMCH1-211ENST00000509638 TSPAN1O60635 241 aa32.6■■■□□ 2.81
LIMCH1-211ENST00000509638 CASP5P51878 434 aa32.6■■■□□ 2.81
LIMCH1-211ENST00000509638 PCBP1Q15365 356 aaKnown RBP eCLIP32.6■■■□□ 2.81
LIMCH1-211ENST00000509638 AMHR2Q16671 573 aa32.6■■■□□ 2.81
LIMCH1-211ENST00000509638 CNKSR3Q6P9H4 555 aa32.6■■■□□ 2.81
LIMCH1-211ENST00000509638 TAS1R3Q7RTX0 852 aa32.6■■■□□ 2.81
LIMCH1-211ENST00000509638 APBB2Q92870 758 aa32.6■■■□□ 2.81
LIMCH1-211ENST00000509638 NUP62CLQ9H1M0 184 aa32.6■■■□□ 2.81
LIMCH1-211ENST00000509638 FZD8Q9H461 694 aa32.6■■■□□ 2.81
LIMCH1-211ENST00000509638 K7ERI5 159 aa32.59■■■□□ 2.81
LIMCH1-211ENST00000509638 SMC2O95347 1197 aa32.59■■■□□ 2.81
LIMCH1-211ENST00000509638 GCNT3O95395 438 aa32.59■■■□□ 2.81
LIMCH1-211ENST00000509638 PPP4R3CPQ6ZMV5 832 aa32.59■■■□□ 2.81
LIMCH1-211ENST00000509638 C16orf59Q7L2K0 433 aa32.59■■■□□ 2.81
LIMCH1-211ENST00000509638 TMX1Q9H3N1 280 aa32.59■■■□□ 2.81
LIMCH1-211ENST00000509638 TMEM134Q9H6X4 195 aa32.59■■■□□ 2.81
LIMCH1-211ENST00000509638 AGPAT5Q9NUQ2 364 aa32.59■■■□□ 2.81
LIMCH1-211ENST00000509638 PIN4Q9Y237 131 aaKnown RBP32.59■■■□□ 2.81
LIMCH1-211ENST00000509638 B4GALT5O43286 388 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 EDN1P05305 212 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 PTMSP20962 102 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 FAM187BQ17R55 369 aa32.58■■■□□ 2.81
LIMCH1-211ENST00000509638 ZC2HC1CQ53FD0 456 aaPredicted RBP32.58■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms