RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 RGL1Q9NZL6 768 aa17.21■□□□□ 0.35
TPM3-219ENST00000509409 INPP5FQ9Y2H2 1132 aa17.21■□□□□ 0.35
TPM3-219ENST00000509409 ARIH1Q9Y4X5 557 aaPredicted RBP17.21■□□□□ 0.35
TPM3-219ENST00000509409 PPME1Q9Y570 386 aa17.21■□□□□ 0.35
TPM3-219ENST00000509409 COL4A3BPQ9Y5P4 624 aa17.21■□□□□ 0.35
TPM3-219ENST00000509409 ZC3H11AO75152 810 aaKnown RBP eCLIP17.2■□□□□ 0.34
TPM3-219ENST00000509409 CXCL14O95715 111 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 YWHABP31946 246 aaKnown RBP17.2■□□□□ 0.34
TPM3-219ENST00000509409 RFC5P40937 340 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 RNASELQ05823 741 aaKnown RBP17.2■□□□□ 0.34
TPM3-219ENST00000509409 TRIM29Q14134 588 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 CTTNQ14247 550 aaKnown RBP17.2■□□□□ 0.34
TPM3-219ENST00000509409 SMC1AQ14683 1233 aaKnown RBP17.2■□□□□ 0.34
TPM3-219ENST00000509409 ME3Q16798 604 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 XKR9Q5GH70 373 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 GLB1LQ6UWU2 654 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 TPH2Q8IWU9 490 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 C4orf19Q8IY42 314 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 SLC39A11Q8N1S5 342 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 PGBD4Q96DM1 585 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 TMEM169Q96HH4 297 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 PHF7Q9BWX1 381 aaPredicted RBP17.2■□□□□ 0.34
TPM3-219ENST00000509409 ZSWIM4Q9H7M6 989 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 FAM105AQ9NUU6 356 aa17.2■□□□□ 0.34
TPM3-219ENST00000509409 WRAP73Q9P2S5 460 aaPredicted RBP17.2■□□□□ 0.34
TPM3-219ENST00000509409 FNDC1Q4ZHG4 1894 aaPredicted RBP17.19■□□□□ 0.34
TPM3-219ENST00000509409 FAM205CA6NFA0 338 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 EIF5BO60841 1220 aaKnown RBP17.19■□□□□ 0.34
TPM3-219ENST00000509409 FDPSP14324 419 aaKnown RBP17.19■□□□□ 0.34
TPM3-219ENST00000509409 RAB27AP51159 221 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 NEK4P51957 841 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 CYP4A11Q02928 519 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 LAMTOR4Q0VGL1 99 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 HERC4Q5GLZ8 1057 aaPredicted RBP17.19■□□□□ 0.34
TPM3-219ENST00000509409 NOMO2Q5JPE7 1267 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 ANKRD54Q6NXT1 300 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 SRGAP1Q7Z6B7 1085 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 TCP11Q8WWU5 503 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 TRAIPQ9BWF2 469 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 GBP3Q9H0R5 595 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 DHX33Q9H6R0 707 aaKnown RBP17.19■□□□□ 0.34
TPM3-219ENST00000509409 IFT122Q9HBG6 1241 aa17.19■□□□□ 0.34
TPM3-219ENST00000509409 LOC730098B7Z3J9 87 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 ZBTB39O15060 712 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 ASAP2O43150 1006 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 OFD1O75665 1012 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 CALCRLQ16602 461 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 TMEM184AQ6ZMB5 413 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 MRPL43Q8N983 215 aaKnown RBP17.18■□□□□ 0.34
TPM3-219ENST00000509409 URGCPQ8TCY9 931 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 RSPH1Q8WYR4 309 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 GTF3C6Q969F1 213 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 PCDHA12Q9UN75 941 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 PCDHB2Q9Y5E7 798 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 KIAA1671Q9BY89 1806 aa17.18■□□□□ 0.34
TPM3-219ENST00000509409 CARNS1A5YM72 827 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 C2orf71A6NGG8 1288 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 BTBD18B2RXH4 712 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 GAS2O43903 313 aaKnown RBP17.17■□□□□ 0.34
TPM3-219ENST00000509409 ZNF623O75123 536 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 SLITRK3O94933 977 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 LARGE1O95461 756 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 EMC2Q15006 297 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 ERICH6BQ5W0A0 696 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 VPS52Q8N1B4 723 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 RNF149Q8NC42 400 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 EDAQ92838 391 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 CASP10Q92851 521 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 CCDC43Q96MW1 224 aaKnown RBP17.17■□□□□ 0.34
TPM3-219ENST00000509409 FAM193BQ96PV7 902 aaPredicted RBP17.17■□□□□ 0.34
TPM3-219ENST00000509409 MTRQ99707 1265 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 EIF2AK1Q9BQI3 630 aaKnown RBP17.17■□□□□ 0.34
TPM3-219ENST00000509409 S1PR5Q9H228 398 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 NRDE2Q9H7Z3 1164 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 AGPAT5Q9NUQ2 364 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 TBC1D13Q9NVG8 400 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 ATG2AQ2TAZ0 1938 aa17.17■□□□□ 0.34
TPM3-219ENST00000509409 MEIS3P2A8K0S8 358 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 JAK2O60674 1132 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 HOXB8P17481 243 aaPredicted RBP17.16■□□□□ 0.34
TPM3-219ENST00000509409 ATP2B1P20020 1258 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 TXKP42681 527 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 KCNC3Q14003 757 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 TPRNQ4KMQ1 711 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 SYCE2Q6PIF2 218 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 FERMT3Q86UX7 667 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 NSUN7Q8NE18 718 aaKnown RBP17.16■□□□□ 0.34
TPM3-219ENST00000509409 SUSD6Q92537 303 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 MFSD14AQ96MC6 490 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 MINDY3Q9H8M7 445 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 PLXNA4Q9HCM2 1894 aa17.16■□□□□ 0.34
TPM3-219ENST00000509409 C5orf42Q9H799 3197 aa17.15■□□□□ 0.34
TPM3-219ENST00000509409 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.15■□□□□ 0.34
TPM3-219ENST00000509409 CLASP2O75122 1294 aaKnown RBP17.15■□□□□ 0.34
TPM3-219ENST00000509409 ERLIN2O94905 339 aa17.15■□□□□ 0.34
TPM3-219ENST00000509409 GALTP07902 379 aa17.15■□□□□ 0.34
TPM3-219ENST00000509409 SPIRE1Q08AE8 756 aa17.15■□□□□ 0.34
TPM3-219ENST00000509409 NCBP1Q09161 790 aaKnown RBP17.15■□□□□ 0.34
TPM3-219ENST00000509409 CBX2Q14781 532 aaPredicted RBP17.15■□□□□ 0.34
TPM3-219ENST00000509409 CES5AQ6NT32 575 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms