RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 KSR1Q8IVT5 923 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 HACE1Q8IYU2 909 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 CEP57L1Q8IYX8 460 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 MYOCDQ8IZQ8 938 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 ASAP3Q8TDY4 903 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 TMEM40Q8WWA1 233 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 IPO9Q96P70 1041 aaKnown RBP10.1□□□□□ -0.79
NUP54-207ENST00000508583 TNMDQ9H2S6 317 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 IFT122Q9HBG6 1241 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 PARVGQ9HBI0 331 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 PRMT7Q9NVM4 692 aaPredicted RBP10.1□□□□□ -0.79
NUP54-207ENST00000508583 CXXC1Q9P0U4 656 aaPredicted RBP10.1□□□□□ -0.79
NUP54-207ENST00000508583 LRFN2Q9ULH4 789 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 PCDHA11Q9Y5I1 949 aa10.1□□□□□ -0.79
NUP54-207ENST00000508583 TCHHQ07283 1943 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 LAMA2P24043 3122 aaKnown RBP10.09□□□□□ -0.79
NUP54-207ENST00000508583 MYH11P35749 1972 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 A0A1W2PQ27 194 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 A0A1W2PQ64 194 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 A0A1W2PQD8 194 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 CCDC169A6NNP5 214 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 TLL1O43897 1013 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 PLS3P13797 630 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 GAP43P17677 238 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 SARSP49591 514 aaKnown RBP10.09□□□□□ -0.79
NUP54-207ENST00000508583 DHX8Q14562 1220 aaKnown RBP10.09□□□□□ -0.79
NUP54-207ENST00000508583 MCM6Q14566 821 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 TMEM132AQ24JP5 1023 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 TWF2Q6IBS0 349 aaKnown RBP10.09□□□□□ -0.79
NUP54-207ENST00000508583 NOTUMQ6P988 496 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 SHC4Q6S5L8 630 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 USP49Q70CQ1 688 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 HERC6Q8IVU3 1022 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 SPIRE2Q8WWL2 714 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 MRPS27Q92552 414 aaKnown RBP10.09□□□□□ -0.79
NUP54-207ENST00000508583 YME1L1Q96TA2 773 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 ADAM2Q99965 735 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 RUSC1Q9BVN2 902 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 TRAIPQ9BWF2 469 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 OSBPL7Q9BZF2 842 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 ELAC1Q9H777 363 aaKnown RBP10.09□□□□□ -0.79
NUP54-207ENST00000508583 CDHR5Q9HBB8 845 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 GPRC5CQ9NQ84 441 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 KMT5AQ9NQR1 393 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 RGS18Q9NS28 235 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 BLOC1S4Q9NUP1 217 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 AGPAT5Q9NUQ2 364 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 SEL1LQ9UBV2 794 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 KCNH3Q9ULD8 1083 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 PIN4Q9Y237 131 aaKnown RBP10.09□□□□□ -0.79
NUP54-207ENST00000508583 INSL6Q9Y581 213 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 PCDHB7Q9Y5E2 793 aa10.09□□□□□ -0.79
NUP54-207ENST00000508583 PTPRSQ13332 1948 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 TTC3P53804 2025 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 CARNS1A5YM72 827 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 K7ERI5 159 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 SOX1O00570 391 aaPredicted RBP10.08□□□□□ -0.8
NUP54-207ENST00000508583 ENPP3O14638 875 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 POLR2DO15514 142 aaKnown RBP10.08□□□□□ -0.8
NUP54-207ENST00000508583 GJB5O95377 273 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 EOMESO95936 686 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 MYL1P05976 194 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 NPTX2P47972 431 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 PEX3P56589 373 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 MBTD1Q05BQ5 628 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 STRN3Q13033 797 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 FAM187BQ17R55 369 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 TCTN1Q2MV58 587 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 PDILTQ8N807 584 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 CNNM3Q8NE01 707 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 TOP1MTQ969P6 601 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 DHX58Q96C10 678 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 ZNF668Q96K58 619 aaPredicted RBP10.08□□□□□ -0.8
NUP54-207ENST00000508583 RAD9AQ99638 391 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 REEP2Q9BRK0 252 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 ADPGKQ9BRR6 497 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 TRIM6Q9C030 488 aaPredicted RBP10.08□□□□□ -0.8
NUP54-207ENST00000508583 TMX1Q9H3N1 280 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 TMEM134Q9H6X4 195 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 TMEM161AQ9NX61 479 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 GBF1Q92538 1859 aa10.08□□□□□ -0.8
NUP54-207ENST00000508583 A0A0U1RQF3 1178 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.07□□□□□ -0.8
NUP54-207ENST00000508583 ACKR2O00590 384 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 N4BP3O15049 544 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 PRKCBP05771 671 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 MAPTP10636 758 aaKnown RBP10.07□□□□□ -0.8
NUP54-207ENST00000508583 PFKFB1P16118 471 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 DNAJB2P25686 324 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 SYKP43405 635 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 ZNF131P52739 623 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 DEFB103AP81534 67 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 RAD51AP2Q09MP3 1159 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 PRPF4BQ13523 1007 aaKnown RBP10.07□□□□□ -0.8
NUP54-207ENST00000508583 ALCAMQ13740 583 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 NAALADL2Q58DX5 795 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 ZNF697Q5TEC3 545 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 FAM109BQ6ICB4 259 aaPredicted RBP10.07□□□□□ -0.8
NUP54-207ENST00000508583 KANK3Q6NY19 840 aa10.07□□□□□ -0.8
NUP54-207ENST00000508583 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms