RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TTC39CQ8N584 583 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 PPTC7Q8NI37 304 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 FAM212AQ96EL1 285 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 NIFKQ9BYG3 293 aaKnown RBP9.11□□□□□ -0.95
USP54-215ENST00000497106 SEMA6BQ9H3T3 888 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 TMEM134Q9H6X4 195 aa9.11□□□□□ -0.95
USP54-215ENST00000497106 RNF216Q9NWF9 866 aaPredicted RBP9.11□□□□□ -0.95
USP54-215ENST00000497106 GTPBP10A4D1E9 387 aaKnown RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 DYNC1LI2O43237 492 aaPredicted RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 CA12O43570 354 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 TLR2O60603 784 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 NPEPPSP55786 919 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 GRB14Q14449 540 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 CCDC94Q9BW85 323 aaPredicted RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 RPF1Q9H9Y2 349 aaKnown RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 TSKSQ9UJT2 592 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 BRCA1P38398 1863 aaKnown RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 NPTX2P47972 431 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 PRMT2P55345 433 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 ENPEPQ07075 957 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 PRPF4BQ13523 1007 aaKnown RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 SLC9A9Q8IVB4 645 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 CCDC60Q8IWA6 550 aaPredicted RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 C12orf56Q8IXR9 622 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 RDH13Q8NBN7 331 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 SYN2Q92777 582 aaPredicted RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 NLRP4Q96MN2 994 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 MAFBQ9Y5Q3 323 aaPredicted RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 SSC5DA1L4H1 1573 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 DICER1Q9UPY3 1922 aaKnown RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 EXTL3O43909 919 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 SRGAP2CP0DJJ0 459 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 PIK3CAP42336 1068 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 LY6KQ17RY6 165 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 DUSP28Q4G0W2 176 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 FAM47CQ5HY64 1035 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 OLFML2BQ68BL8 750 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 KRT39Q6A163 491 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 RHPN2Q8IUC4 686 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 MAP4K3Q8IVH8 894 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 JAKMIP2Q96AA8 810 aa9.1□□□□□ -0.95
USP54-215ENST00000497106 AGO2Q9UKV8 859 aaKnown RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 EPN1Q9Y6I3 576 aaPredicted RBP9.1□□□□□ -0.95
USP54-215ENST00000497106 CTAGE9A4FU28 777 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 DHX15O43143 795 aaKnown RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 ATP9AO75110 1047 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 GFPT2O94808 682 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 NCKAP1LP55160 1127 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 GTF2BQ00403 316 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 BFSP1Q12934 665 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 PCSK9Q8NBP7 692 aaKnown RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 KIAA1524Q8TCG1 905 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 TMC2Q8TDI7 906 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 HPS3Q969F9 1004 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 PORCNQ9H237 461 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 PCIF1Q9H4Z3 704 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 ABHD10Q9NUJ1 306 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 Q9Y3F1 56 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 PHIPQ8WWQ0 1821 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 ANKRD62A6NC57 917 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 COBLO75128 1261 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 MAFO75444 373 aaPredicted RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 ECM2O94769 699 aaPredicted RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 IL18RAPO95256 599 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 CCNE2O96020 404 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 ECM1Q16610 540 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 ZNF410Q86VK4 478 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 CCDC155Q8N6L0 562 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 PLVAPQ9BX97 442 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 RSPH10B2B2RC85 870 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 MSCO60682 206 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 RSPH10BP0C881 870 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 BMP6P22004 513 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 MCM3P25205 808 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 MARSP56192 900 aaKnown RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 ZPBP2Q6X784 338 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 RNF149Q8NC42 400 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 PPP2R2CQ9Y2T4 447 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 ARHGEF37A1IGU5 675 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 CNMDO75829 334 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 TBXAS1P24557 533 aaPredicted RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 RDXP35241 583 aaKnown RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 MAGEA1P43355 309 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 CLUL1Q15846 466 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 ZNF792Q3KQV3 632 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 CCDC122Q5T0U0 273 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 EFCAB12Q6NXP0 572 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 SRGAP1Q7Z6B7 1085 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 CCAR2Q8N163 923 aaKnown RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 TMEM143Q96AN5 459 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 MAML3Q96JK9 1138 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 GPR20Q99678 358 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 DUSP9Q99956 384 aaKnown RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 NLRC4Q9NPP4 1024 aa9.09□□□□□ -0.95
USP54-215ENST00000497106 TOPORSQ9NS56 1045 aaPredicted RBP9.09□□□□□ -0.95
USP54-215ENST00000497106 LGALS2P05162 132 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 DLATP10515 647 aaKnown RBP9.08□□□□□ -0.96
USP54-215ENST00000497106 PAFAH1B1P43034 410 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 PDE6CP51160 858 aa9.08□□□□□ -0.96
USP54-215ENST00000497106 ENOX2Q16206 610 aaKnown RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms